Expression of 1-1-3.4.11.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.910.578
27DAP/17DAP1.351110.688
39DAP/27DAP0.740820.443
41DAP/39DAP1.193360.765
42DAP/41DAP1.182690.983
43DAP/42DAP0.96890.912
47DAP/43DAP1.159130.513
52DAP/47DAP0.905080.716
57DAP/52DAP0.939310.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.998540.756
17DAP/reference1.166730.041
27DAP/reference0.932050.295
39DAP/reference1.035590.615
41DAP/reference1.108820.393
42DAP/reference0.936650.176
43DAP/reference1.046170.787
47DAP/reference0.865550.09
52DAP/reference0.856790.099
57DAP/reference0.815180.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.00561
27DAP/17DAP1.018040.98
39DAP/27DAP1.033750.793
41DAP/39DAP0.988441
42DAP/41DAP1.105170.582
43DAP/42DAP1.143420.072
47DAP/43DAP1.094430.563
52DAP/47DAP1.00880.991
57DAP/52DAP0.974910.705
57DAP/7DAP1.047611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.838760.108
17DAP/reference0.726420.011
27DAP/reference0.698790.011
39DAP/reference0.705410.011
41DAP/reference0.800220.04
42DAP/reference0.673660.013
43DAP/reference0.683940.018
47DAP/reference0.864290.293
52DAP/reference0.732520.027
57DAP/reference0.708410.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9950.869
17DAP/reference1.033230.999
27DAP/reference0.980370.554
39DAP/reference0.867760.173
41DAP/reference1.107030.459
42DAP/reference0.854550.108
43DAP/reference1.079980.713
47DAP/reference0.959040.39
52DAP/reference1.091450.259
57DAP/reference0.934710.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.781250.074
17DAP/reference0.972880.636
27DAP/reference0.750290.051
39DAP/reference0.864050.199
41DAP/reference0.866590.107
42DAP/reference0.699410.036
43DAP/reference0.665620.016
47DAP/reference0.841150.125
52DAP/reference0.63920.08
57DAP/reference0.819640.225

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.101260.966
26DAP/20DAP0.865850.512
34DAP/26DAP0.861890.565
51DAP/34DAP0.994320.927
52DAP/51DAP1.219830.246
53DAP/52DAP1.135620.537
55DAP/53DAP1.016530.876
57DAP/55DAP1.000710.923
62DAP/57DAP1.221660.35
68DAP/62DAP0.864930.314
68DAP/14DAP1.415840.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.998980.814

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.321960.019
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.33746

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.8971

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.6993
IL7-5/WTpooled0.83442
IL7-3/WTpooled0.903930.418
IL12-4/WTpooled1.08780.624
IL1-4/WTpooled1.04579
WT/WTpooled1.042121

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.263720.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.735270.941
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.103361
DC3000/delta hrp 24h0.758260.049

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.014371
DC3000 delta B/DC3000 delta AB0.968840.729

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987181
Var 0h0.840030.782
Var 12h I row2-row11.167220.215
Var 12h NI row2-row10.927210.82
Var 36h I row2-row10.814080.805
Var 36h NI row2-row11.555351
Var 60h I row2-row11.20550.562
Var 60h NI row2-row11.23410.904
Time course 0hI-0hNI1.045170.852
Time course 12hI-12hNI1.045060.746
Time course 36hI-36hNI1.052280.128
Time course 60hI-60hNI1.019640.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.996180.931
transgenic ySAMdc/azygous control (breaker)1.005011
transgenic ySAMdc/azygous control (red)1.074550.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.962350.146

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.850390.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.335190.09
Manapal/WT (break)1.11531
Manapal/WT (red)1.092711