Expression of 1-1-3.4.11.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91 | 0.578 |
27DAP/17DAP | 1.35111 | 0.688 |
39DAP/27DAP | 0.74082 | 0.443 |
41DAP/39DAP | 1.19336 | 0.765 |
42DAP/41DAP | 1.18269 | 0.983 |
43DAP/42DAP | 0.9689 | 0.912 |
47DAP/43DAP | 1.15913 | 0.513 |
52DAP/47DAP | 0.90508 | 0.716 |
57DAP/52DAP | 0.93931 | 0.926 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99854 | 0.756 |
17DAP/reference | 1.16673 | 0.041 |
27DAP/reference | 0.93205 | 0.295 |
39DAP/reference | 1.03559 | 0.615 |
41DAP/reference | 1.10882 | 0.393 |
42DAP/reference | 0.93665 | 0.176 |
43DAP/reference | 1.04617 | 0.787 |
47DAP/reference | 0.86555 | 0.09 |
52DAP/reference | 0.85679 | 0.099 |
57DAP/reference | 0.81518 | 0.017 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0056 | 1 |
27DAP/17DAP | 1.01804 | 0.98 |
39DAP/27DAP | 1.03375 | 0.793 |
41DAP/39DAP | 0.98844 | 1 |
42DAP/41DAP | 1.10517 | 0.582 |
43DAP/42DAP | 1.14342 | 0.072 |
47DAP/43DAP | 1.09443 | 0.563 |
52DAP/47DAP | 1.0088 | 0.991 |
57DAP/52DAP | 0.97491 | 0.705 |
57DAP/7DAP | 1.04761 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83876 | 0.108 |
17DAP/reference | 0.72642 | 0.011 |
27DAP/reference | 0.69879 | 0.011 |
39DAP/reference | 0.70541 | 0.011 |
41DAP/reference | 0.80022 | 0.04 |
42DAP/reference | 0.67366 | 0.013 |
43DAP/reference | 0.68394 | 0.018 |
47DAP/reference | 0.86429 | 0.293 |
52DAP/reference | 0.73252 | 0.027 |
57DAP/reference | 0.70841 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.995 | 0.869 |
17DAP/reference | 1.03323 | 0.999 |
27DAP/reference | 0.98037 | 0.554 |
39DAP/reference | 0.86776 | 0.173 |
41DAP/reference | 1.10703 | 0.459 |
42DAP/reference | 0.85455 | 0.108 |
43DAP/reference | 1.07998 | 0.713 |
47DAP/reference | 0.95904 | 0.39 |
52DAP/reference | 1.09145 | 0.259 |
57DAP/reference | 0.93471 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78125 | 0.074 |
17DAP/reference | 0.97288 | 0.636 |
27DAP/reference | 0.75029 | 0.051 |
39DAP/reference | 0.86405 | 0.199 |
41DAP/reference | 0.86659 | 0.107 |
42DAP/reference | 0.69941 | 0.036 |
43DAP/reference | 0.66562 | 0.016 |
47DAP/reference | 0.84115 | 0.125 |
52DAP/reference | 0.6392 | 0.08 |
57DAP/reference | 0.81964 | 0.225 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10126 | 0.966 |
26DAP/20DAP | 0.86585 | 0.512 |
34DAP/26DAP | 0.86189 | 0.565 |
51DAP/34DAP | 0.99432 | 0.927 |
52DAP/51DAP | 1.21983 | 0.246 |
53DAP/52DAP | 1.13562 | 0.537 |
55DAP/53DAP | 1.01653 | 0.876 |
57DAP/55DAP | 1.00071 | 0.923 |
62DAP/57DAP | 1.22166 | 0.35 |
68DAP/62DAP | 0.86493 | 0.314 |
68DAP/14DAP | 1.41584 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99898 | 0.814 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.32196 | 0.019 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.33746 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.8971 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.6993 | |
IL7-5/WTpooled | 0.83442 | |
IL7-3/WTpooled | 0.90393 | 0.418 |
IL12-4/WTpooled | 1.0878 | 0.624 |
IL1-4/WTpooled | 1.04579 | |
WT/WTpooled | 1.04212 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.26372 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.73527 | 0.941 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.10336 | 1 |
DC3000/delta hrp 24h | 0.75826 | 0.049 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.01437 | 1 |
DC3000 delta B/DC3000 delta AB | 0.96884 | 0.729 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98718 | 1 |
Var 0h | 0.84003 | 0.782 |
Var 12h I row2-row1 | 1.16722 | 0.215 |
Var 12h NI row2-row1 | 0.92721 | 0.82 |
Var 36h I row2-row1 | 0.81408 | 0.805 |
Var 36h NI row2-row1 | 1.55535 | 1 |
Var 60h I row2-row1 | 1.2055 | 0.562 |
Var 60h NI row2-row1 | 1.2341 | 0.904 |
Time course 0hI-0hNI | 1.04517 | 0.852 |
Time course 12hI-12hNI | 1.04506 | 0.746 |
Time course 36hI-36hNI | 1.05228 | 0.128 |
Time course 60hI-60hNI | 1.01964 | 0.575 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99618 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 1.00501 | 1 |
transgenic ySAMdc/azygous control (red) | 1.07455 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96235 | 0.146 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85039 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.33519 | 0.09 |
Manapal/WT (break) | 1.1153 | 1 |
Manapal/WT (red) | 1.09271 | 1 |
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