Expression of 1-1-3.4.12.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82287 | 0.486 |
27DAP/17DAP | 1.20115 | 0.841 |
39DAP/27DAP | 1.20558 | 0.583 |
41DAP/39DAP | 0.9184 | 0.645 |
42DAP/41DAP | 1.47334 | 0.107 |
43DAP/42DAP | 1.07657 | 1 |
47DAP/43DAP | 1.59921 | 0.293 |
52DAP/47DAP | 0.77368 | 0.367 |
57DAP/52DAP | 1.14188 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00412 | 0.743 |
17DAP/reference | 0.9137 | 0.18 |
27DAP/reference | 0.95754 | 0.552 |
39DAP/reference | 1.07162 | 0.771 |
41DAP/reference | 1.05124 | 0.759 |
42DAP/reference | 1.07607 | 0.565 |
43DAP/reference | 1.37098 | 0.013 |
47DAP/reference | 1.62397 | 0.002 |
52DAP/reference | 1.13451 | 0.633 |
57DAP/reference | 1.16692 | 0.153 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13053 | 0.675 |
27DAP/17DAP | 0.99296 | 0.943 |
39DAP/27DAP | 1.29546 | 0.369 |
41DAP/39DAP | 0.95389 | 0.875 |
42DAP/41DAP | 1.74156 | 0.159 |
43DAP/42DAP | 3.48182 | 0.013 |
47DAP/43DAP | 1.06349 | 0.822 |
52DAP/47DAP | 0.93485 | 0.746 |
57DAP/52DAP | 0.63339 | 0.103 |
57DAP/7DAP | 1.91615 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03629 | 0.857 |
17DAP/reference | 0.92405 | 0.124 |
27DAP/reference | 1.06377 | 0.664 |
39DAP/reference | 0.80733 | 0.083 |
41DAP/reference | 0.87158 | 0.133 |
42DAP/reference | 0.71666 | 0.025 |
43DAP/reference | 0.97476 | 0.48 |
47DAP/reference | 0.83607 | 0.293 |
52DAP/reference | 0.80405 | 0.033 |
57DAP/reference | 0.87625 | 0.069 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25005 | 0.477 |
17DAP/reference | 1.0811 | 0.773 |
27DAP/reference | 1.02895 | 0.769 |
39DAP/reference | 1.09354 | 0.686 |
41DAP/reference | 1.16994 | 0.846 |
42DAP/reference | 0.99468 | 0.534 |
43DAP/reference | 0.93447 | 0.459 |
47DAP/reference | 0.98831 | 0.574 |
52DAP/reference | 0.82968 | 0.22 |
57DAP/reference | 1.07558 | 0.807 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04605 | 1 |
17DAP/reference | 1.09741 | 0.321 |
27DAP/reference | 1.12999 | 0.171 |
39DAP/reference | 1.03135 | 0.836 |
41DAP/reference | 1.04436 | 0.674 |
42DAP/reference | 0.99105 | 0.816 |
43DAP/reference | 1.26326 | 0.396 |
47DAP/reference | 1.22098 | 0.031 |
52DAP/reference | 1.16846 | 0.609 |
57DAP/reference | 1.27549 | 0.071 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.40596 | 0.966 |
26DAP/20DAP | 0.86474 | 1 |
34DAP/26DAP | 0.92903 | 0.917 |
51DAP/34DAP | 1.12093 | 0.936 |
52DAP/51DAP | 1.12431 | 0.842 |
53DAP/52DAP | 1.12018 | 0.845 |
55DAP/53DAP | 1.00867 | 0.939 |
57DAP/55DAP | 1.26184 | 0.906 |
62DAP/57DAP | 0.90911 | 0.681 |
68DAP/62DAP | 0.89904 | 0.747 |
68DAP/14DAP | 1.57159 | 0.403 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.64241 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.31502 | 0.023 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.46654 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.33507 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.10636 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.86743 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 2.05156 | |
4-3-2/M82 | 3.66069 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.9865 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.49293 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.7691 | 0.247 |
IL2-6/WTpooled | 1.10709 | 0.456 |
IL7-5/WTpooled | 0.65781 | |
IL7-3/WTpooled | 0.90721 | 1 |
IL12-4/WTpooled | 0.78873 | 0.478 |
IL1-4/WTpooled | 0.99276 | 1 |
WT/WTpooled | 0.99256 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.92604 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91568 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.82208 | 0.087 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0206 | 1 |
Var 0h | 0.77338 | 1 |
Var 12h I row2-row1 | 0.90241 | 0.77 |
Var 12h NI row2-row1 | 1.73316 | 1 |
Var 36h I row2-row1 | 0.99334 | 1 |
Var 36h NI row2-row1 | 0.7953 | 0.645 |
Var 60h I row2-row1 | 0.97042 | 0.374 |
Var 60h NI row2-row1 | 0.63107 | 0.292 |
Time course 0hI-0hNI | 0.99188 | 0.991 |
Time course 12hI-12hNI | 1.06719 | 0.554 |
Time course 36hI-36hNI | 1.20516 | 0.166 |
Time course 60hI-60hNI | 1.31682 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.4666 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 1.68851 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.18623 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0007 | 0.967 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0166 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.13599 | 0.096 |
Manapal/WT (break) | 0.6404 | 0.333 |
Manapal/WT (red) | 0.64949 | 0.184 |
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