Expression of 1-1-3.4.12.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.822870.486
27DAP/17DAP1.201150.841
39DAP/27DAP1.205580.583
41DAP/39DAP0.91840.645
42DAP/41DAP1.473340.107
43DAP/42DAP1.076571
47DAP/43DAP1.599210.293
52DAP/47DAP0.773680.367
57DAP/52DAP1.141880.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.004120.743
17DAP/reference0.91370.18
27DAP/reference0.957540.552
39DAP/reference1.071620.771
41DAP/reference1.051240.759
42DAP/reference1.076070.565
43DAP/reference1.370980.013
47DAP/reference1.623970.002
52DAP/reference1.134510.633
57DAP/reference1.166920.153

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.130530.675
27DAP/17DAP0.992960.943
39DAP/27DAP1.295460.369
41DAP/39DAP0.953890.875
42DAP/41DAP1.741560.159
43DAP/42DAP3.481820.013
47DAP/43DAP1.063490.822
52DAP/47DAP0.934850.746
57DAP/52DAP0.633390.103
57DAP/7DAP1.916150.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036290.857
17DAP/reference0.924050.124
27DAP/reference1.063770.664
39DAP/reference0.807330.083
41DAP/reference0.871580.133
42DAP/reference0.716660.025
43DAP/reference0.974760.48
47DAP/reference0.836070.293
52DAP/reference0.804050.033
57DAP/reference0.876250.069

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.250050.477
17DAP/reference1.08110.773
27DAP/reference1.028950.769
39DAP/reference1.093540.686
41DAP/reference1.169940.846
42DAP/reference0.994680.534
43DAP/reference0.934470.459
47DAP/reference0.988310.574
52DAP/reference0.829680.22
57DAP/reference1.075580.807

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046051
17DAP/reference1.097410.321
27DAP/reference1.129990.171
39DAP/reference1.031350.836
41DAP/reference1.044360.674
42DAP/reference0.991050.816
43DAP/reference1.263260.396
47DAP/reference1.220980.031
52DAP/reference1.168460.609
57DAP/reference1.275490.071

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.405960.966
26DAP/20DAP0.864741
34DAP/26DAP0.929030.917
51DAP/34DAP1.120930.936
52DAP/51DAP1.124310.842
53DAP/52DAP1.120180.845
55DAP/53DAP1.008670.939
57DAP/55DAP1.261840.906
62DAP/57DAP0.909110.681
68DAP/62DAP0.899040.747
68DAP/14DAP1.571590.403

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.642410.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.315020.023
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.466540.293
Mature Eggplant/Ripe Tomato0.335071

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.10636
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.86743
4-1-1/M82N/AN/A
4-1/M822.05156
4-3-2/M823.66069
4-3/M82N/AN/A
5-3/M820.98651
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.492931

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.76910.247
IL2-6/WTpooled1.107090.456
IL7-5/WTpooled0.65781
IL7-3/WTpooled0.907211
IL12-4/WTpooled0.788730.478
IL1-4/WTpooled0.992761
WT/WTpooled0.992561

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.92604

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.915681
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.822080.087

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02061
Var 0h0.773381
Var 12h I row2-row10.902410.77
Var 12h NI row2-row11.733161
Var 36h I row2-row10.993341
Var 36h NI row2-row10.79530.645
Var 60h I row2-row10.970420.374
Var 60h NI row2-row10.631070.292
Time course 0hI-0hNI0.991880.991
Time course 12hI-12hNI1.067190.554
Time course 36hI-36hNI1.205160.166
Time course 60hI-60hNI1.316820.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.46660.428
transgenic ySAMdc/azygous control (breaker)1.688510.172
transgenic ySAMdc/azygous control (red)1.186231

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.00070.967

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.01661

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.135990.096
Manapal/WT (break)0.64040.333
Manapal/WT (red)0.649490.184