Expression of 1-1-3.4.13.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92448 | 0.551 |
27DAP/17DAP | 0.97942 | 0.928 |
39DAP/27DAP | 1.09606 | 0.946 |
41DAP/39DAP | 1.06624 | 0.663 |
42DAP/41DAP | 1.14184 | 0.856 |
43DAP/42DAP | 0.89886 | 0.801 |
47DAP/43DAP | 1.01464 | 0.979 |
52DAP/47DAP | 1.16038 | 0.724 |
57DAP/52DAP | 0.97947 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03788 | 0.928 |
17DAP/reference | 1.00838 | 0.696 |
27DAP/reference | 1.01315 | 0.759 |
39DAP/reference | 0.974 | 0.651 |
41DAP/reference | 1.03073 | 0.312 |
42DAP/reference | 0.85907 | 0.003 |
43DAP/reference | 1.00128 | 0.942 |
47DAP/reference | 0.91768 | 0.046 |
52DAP/reference | 0.85711 | 0.058 |
57DAP/reference | 0.96336 | 0.435 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99299 | 0.826 |
27DAP/17DAP | 0.98033 | 0.821 |
39DAP/27DAP | 0.97433 | 0.673 |
41DAP/39DAP | 1.02882 | 0.753 |
42DAP/41DAP | 0.96167 | 0.603 |
43DAP/42DAP | 0.99745 | 1 |
47DAP/43DAP | 0.99093 | 0.954 |
52DAP/47DAP | 0.9895 | 0.93 |
57DAP/52DAP | 0.97331 | 0.637 |
57DAP/7DAP | 1.10777 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9998 | 1 |
17DAP/reference | 0.95038 | 0.039 |
27DAP/reference | 0.94456 | 0.058 |
39DAP/reference | 1.03177 | 0.46 |
41DAP/reference | 0.99617 | 0.709 |
42DAP/reference | 0.98525 | 0.458 |
43DAP/reference | 0.94015 | 0.241 |
47DAP/reference | 0.90743 | 0.222 |
52DAP/reference | 0.86567 | 0.179 |
57DAP/reference | 0.94889 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0488 | 0.456 |
17DAP/reference | 1.02666 | 0.874 |
27DAP/reference | 0.98237 | 0.554 |
39DAP/reference | 0.89005 | 0.122 |
41DAP/reference | 0.87349 | 0.076 |
42DAP/reference | 0.88662 | 0.021 |
43DAP/reference | 1.10307 | 0.152 |
47DAP/reference | 0.96079 | 0.178 |
52DAP/reference | 0.95189 | 0.22 |
57DAP/reference | 0.98931 | 0.72 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01686 | 0.723 |
17DAP/reference | 1.07359 | 0.467 |
27DAP/reference | 0.96951 | 0.397 |
39DAP/reference | 1.111 | 0.075 |
41DAP/reference | 0.95781 | 0.264 |
42DAP/reference | 0.81154 | 0.071 |
43DAP/reference | 0.89605 | 0.106 |
47DAP/reference | 0.95035 | 0.269 |
52DAP/reference | 1.0384 | 0.714 |
57DAP/reference | 0.79905 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97549 | 1 |
26DAP/20DAP | 0.98786 | 1 |
34DAP/26DAP | 1.00118 | 1 |
51DAP/34DAP | 0.94692 | 0.618 |
52DAP/51DAP | 0.97198 | 1 |
53DAP/52DAP | 1.04342 | 0.868 |
55DAP/53DAP | 0.97113 | 0.725 |
57DAP/55DAP | 1.31427 | 0.745 |
62DAP/57DAP | 0.98535 | 0.871 |
68DAP/62DAP | 1.01981 | 1 |
68DAP/14DAP | 1.05142 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0678 | 0.172 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.99324 | 0.886 |
Mature Green Tomato/Ripe Tomato | 1.17133 | 0.478 |
Immature Eggplant/Mature Eggplant | 1.11541 | 0.334 |
Ripe Pepper/Ripe Tomato | 0.95569 | 1 |
Mature Eggplant/Ripe Tomato | 1.76301 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0503 | 1 |
1-1-2/M82 | 0.97157 | 1 |
12-2/M82 | 0.9727 | 0.955 |
12-4/M82 | 1.04334 | 1 |
1-3/M82 | 0.90487 | 0.441 |
2-1-1/M82 | 1.02679 | 1 |
2-1/M82 | 1.29747 | 1 |
2-6/M82 | 1.00299 | 1 |
3-2/M82 | 0.99248 | 1 |
4-1-1/M82 | 1.00877 | 1 |
4-1/M82 | 1.02652 | 1 |
4-3-2/M82 | 1.08249 | 0.508 |
4-3/M82 | 1.00761 | 1 |
5-3/M82 | 1.04779 | 0.467 |
6-2/M82 | 1.01734 | 1 |
6-3/M82 | 1.01648 | 1 |
7-1/M82 | 0.99305 | 1 |
7-2/M82 | 1.0607 | 1 |
9-3-2/M82 | 0.98414 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.84074 | |
IL2-6/WTpooled | 1.52641 | 0.395 |
IL7-5/WTpooled | 1.14363 | |
IL7-3/WTpooled | 1.13917 | 1 |
IL12-4/WTpooled | 0.82256 | 1 |
IL1-4/WTpooled | 1.64714 | 1 |
WT/WTpooled | 1.09892 | 0.855 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08561 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03307 | 0.692 |
DC3000/delta hrp 6h | 0.92578 | 0.95 |
DC3000/delta hrp 12h | 1.07037 | 1 |
DC3000/delta hrp 24h | 1.0352 | 0.655 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.99949 | 1 |
DC3000 delta B/DC3000 delta AB | 1.07223 | 0.433 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84834 | 1 |
Exp 36h | 1.2119 | 1 |
Exp 60h | 1.13024 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99138 | 1 |
Var 0h | 0.91823 | 0.933 |
Var 12h I row2-row1 | 1.12999 | 0.406 |
Var 12h NI row2-row1 | 0.96081 | 0.906 |
Var 36h I row2-row1 | 1.13527 | 0.908 |
Var 36h NI row2-row1 | 0.91501 | 0.645 |
Var 60h I row2-row1 | 1.18678 | 0.562 |
Var 60h NI row2-row1 | 1.09818 | 0.904 |
Time course 0hI-0hNI | 1.0023 | 1 |
Time course 12hI-12hNI | 1.02031 | 0.82 |
Time course 36hI-36hNI | 1.07021 | 0.166 |
Time course 60hI-60hNI | 1.12758 | 0.037 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94706 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 1.54748 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.14181 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99225 | 0.5 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93018 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.03844 | 1 |
Manapal/WT (break) | 0.98458 | 1 |
Manapal/WT (red) | 0.96374 | 0.728 |
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