Expression of 1-1-3.4.13.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.219920.485
27DAP/17DAP1.121910.872
39DAP/27DAP1.191090.658
41DAP/39DAP1.091690.691
42DAP/41DAP0.997441
43DAP/42DAP1.078871
47DAP/43DAP0.98090.825
52DAP/47DAP1.344130.43
57DAP/52DAP1.071931

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.929930.128
17DAP/reference1.028820.476
27DAP/reference1.071510.156
39DAP/reference1.003490.991
41DAP/reference0.998261
42DAP/reference0.938660.134
43DAP/reference0.88760.143
47DAP/reference1.018070.817
52DAP/reference0.967460.461
57DAP/reference0.871770.138

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.213670.061
27DAP/17DAP1.032760.905
39DAP/27DAP0.964180.622
41DAP/39DAP0.984560.997
42DAP/41DAP1.005671
43DAP/42DAP0.937790.101
47DAP/43DAP0.960690.559
52DAP/47DAP0.97420.893
57DAP/52DAP0.988840.784
57DAP/7DAP1.212320.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.261960.189
17DAP/reference1.6210.006
27DAP/reference1.744120.006
39DAP/reference2.055060.005
41DAP/reference2.243780.009
42DAP/reference2.33890.006
43DAP/reference2.993420.007
47DAP/reference1.775310.028
52DAP/reference2.29740.007
57DAP/reference2.553240.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910540.124
17DAP/reference1.014030.839
27DAP/reference1.201780.781
39DAP/reference1.039970.956
41DAP/reference0.922050.148
42DAP/reference0.988750.594
43DAP/reference1.014330.814
47DAP/reference1.090890.247
52DAP/reference0.934060.131
57DAP/reference0.988310.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.112460.162
17DAP/reference1.079850.65
27DAP/reference1.540170.019
39DAP/reference1.606860.018
41DAP/reference1.510690.047
42DAP/reference1.40210.163
43DAP/reference1.31140.375
47DAP/reference1.117820.11
52DAP/reference1.905970.033
57DAP/reference1.106810.933

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.00431
26DAP/20DAP1.05780.813
34DAP/26DAP0.978490.961
51DAP/34DAP0.94740.508
52DAP/51DAP1.008110.904
53DAP/52DAP1.083340.697
55DAP/53DAP0.912630.115
57DAP/55DAP0.841870.448
62DAP/57DAP0.97780.871
68DAP/62DAP1.102950.85
68DAP/14DAP0.967381

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.427540.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.785340.238
Mature Green Tomato/Ripe Tomato0.898450.569
Immature Eggplant/Mature Eggplant1.203710.198
Ripe Pepper/Ripe Tomato0.739770.293
Mature Eggplant/Ripe Tomato0.433380.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.930440.605
1-1-2/M820.947091
12-2/M820.936640.955
12-4/M821.037821
1-3/M821.121110.479
2-1-1/M820.853390.465
2-1/M821.052691
2-6/M820.939471
3-2/M820.985761
4-1-1/M821.03551
4-1/M820.838090.737
4-3-2/M821.026341
4-3/M820.869731
5-3/M820.97161
6-2/M821.03071
6-3/M821.047741
7-1/M821.053440.556
7-2/M820.858010.486
9-3-2/M820.926510.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.079550.493
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.266380.792
IL7-3/WTpooled1.04413
IL12-4/WTpooled1.189850.673
IL1-4/WTpooled1.076641
WT/WTpooled1.022171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.955390.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.035980.921
DC3000/delta hrp 6h1.166251
DC3000/delta hrp 12h1.04831
DC3000/delta hrp 24h1.026130.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.988441
DC3000 delta B/DC3000 delta AB1.002211

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.218591
Exp 36h1.094021
Exp 60h1.085751

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.8391
Var 12h I row2-row11.02070.795
Var 12h NI row2-row11.148741
Var 36h I row2-row10.934881
Var 36h NI row2-row11.165951
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.787750.756
Time course 0hI-0hNI1.03480.852
Time course 12hI-12hNI1.002741
Time course 36hI-36hNI1.015210.881
Time course 60hI-60hNI1.098770.053

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.055760.748
transgenic ySAMdc/azygous control (breaker)0.849070.173
transgenic ySAMdc/azygous control (red)1.113741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.968750.186

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.070661

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.722271
Manapal/WT (break)0.972041
Manapal/WT (red)1.037851