Expression of 1-1-3.4.14.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.773670.303
27DAP/17DAP0.80370.5
39DAP/27DAP1.491910.242
41DAP/39DAP0.574160.045
42DAP/41DAP0.81461
43DAP/42DAP1.100991
47DAP/43DAP0.469990.049
52DAP/47DAP1.424950.483
57DAP/52DAP1.39190.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.217550.007
17DAP/reference1.3440.33
27DAP/reference0.779350.028
39DAP/reference0.791020.097
41DAP/reference0.976120.542
42DAP/reference1.407520.13
43DAP/reference0.844360.118
47DAP/reference0.880270.032
52DAP/reference0.604410.013
57DAP/reference0.710260.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.913970.716
27DAP/17DAP1.455190.085
39DAP/27DAP1.07219
41DAP/39DAP2.3232
42DAP/41DAP0.66891
43DAP/42DAP1.23926
47DAP/43DAP1.619430.805
52DAP/47DAP3.66818
57DAP/52DAP1.533740.073
57DAP/7DAP1.80727

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.547430.024
17DAP/reference2.039040.006
27DAP/reference1.503820.007
39DAP/reference1.192210.028
41DAP/reference1.761410.008
42DAP/reference1.345540.037
43DAP/reference1.255640.048
47DAP/reference1.188560.595
52DAP/reference1.259730.212
57DAP/reference1.005920.67

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.124660.97
17DAP/reference2.2740.584
27DAP/reference1.336340.471
39DAP/reference0.989510.603
41DAP/reference1.441261
42DAP/reference1.892660.39
43DAP/reference1.070360.949
47DAP/reference1.529720.572
52DAP/reference0.874950.203
57DAP/reference0.910150.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.459980.015
17DAP/reference1.630970.273
27DAP/reference1.586410.02
39DAP/reference1.534520.007
41DAP/reference1.130650.108
42DAP/reference1.140170.416
43DAP/reference1.256460.151
47DAP/referenceN/AN/A
52DAP/reference0.95280.596
57DAP/reference1.015830.8

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.804640.65
26DAP/20DAPN/AN/A
34DAP/26DAP1.59050.819
51DAP/34DAP1.520130.719
52DAP/51DAP1.00214
53DAP/52DAP1.59840.517
55DAP/53DAP1.486630.494
57DAP/55DAP1.537060.031
62DAP/57DAP0.83117
68DAP/62DAP0.642270.579
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.08206

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.085930.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.26545
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.0159
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.899380.253
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.00413
7-2/M82N/AN/A
9-3-2/M821.621480.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.86874
IL2-6/WTpooled0.820051
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.450451
IL12-4/WTpooled1.274740.785
IL1-4/WTpooled1.15118
WT/WTpooled0.986941

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.466251
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.76620.936
Var 12h I row2-row10.825140.418
Var 12h NI row2-row11.30762
Var 36h I row2-row11.260081
Var 36h NI row2-row11.012551
Var 60h I row2-row10.933680.374
Var 60h NI row2-row10.87552
Time course 0hI-0hNI1.27277
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.354170.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.16651
Manapal/WT (red)N/AN/A