Expression of 1-1-3.4.14.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.075690.975
27DAP/17DAP1.201520.8
39DAP/27DAP1.357980.296
41DAP/39DAP0.990290.772
42DAP/41DAP1.177270.863
43DAP/42DAP1.116860.968
47DAP/43DAP1.108610.569
52DAP/47DAP0.833060.545
57DAP/52DAP1.225360.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.092030.366
17DAP/reference1.080270.132
27DAP/reference1.01770.771
39DAP/reference1.059150.377
41DAP/reference1.093540.062
42DAP/reference0.867360.01
43DAP/reference0.962380.346
47DAP/reference0.874430.015
52DAP/reference0.879150.037
57DAP/reference0.857530.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.092730.278
27DAP/17DAP0.945610.854
39DAP/27DAP1.051220.874
41DAP/39DAP1.077890.914
42DAP/41DAP1.019541
43DAP/42DAP0.87490.172
47DAP/43DAP0.963130.855
52DAP/47DAP0.892870.269
57DAP/52DAP1.20490.654
57DAP/7DAP1.023671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.846390.095
17DAP/reference0.828650.072
27DAP/reference0.817190.071
39DAP/reference0.832710.039
41DAP/reference0.823770.079
42DAP/reference0.815510.09
43DAP/reference0.768340.011
47DAP/reference0.77760.04
52DAP/reference0.751830.023
57DAP/reference1.051840.629

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.226730.09
17DAP/reference1.151010.079
27DAP/reference0.970250.483
39DAP/reference0.914080.235
41DAP/reference0.933290.268
42DAP/reference0.921290.237
43DAP/reference0.951750.45
47DAP/reference0.885150.058
52DAP/reference0.966280.407
57DAP/reference0.944650.361

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.945640.455
17DAP/reference1.120310.65
27DAP/reference0.838260.063
39DAP/reference0.802860.031
41DAP/reference0.972350.56
42DAP/reference0.855080.108
43DAP/reference0.87180.04
47DAP/reference0.914430.183
52DAP/reference0.785710.084
57DAP/reference0.850460.046

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.161090.966
26DAP/20DAP1.279520.265
34DAP/26DAP0.967830.954
51DAP/34DAP1.070630.84
52DAP/51DAP0.732650.151
53DAP/52DAP0.833520.455
55DAP/53DAP0.660230.045
57DAP/55DAP1.086670.935
62DAP/57DAP0.964540.871
68DAP/62DAP1.052361
68DAP/14DAP0.845770.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.834560.047

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.303110.063
Mature Green Tomato/Ripe Tomato1.955840.016
Immature Eggplant/Mature Eggplant0.560760.062
Ripe Pepper/Ripe Tomato2.797390.258
Mature Eggplant/Ripe Tomato1.797241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.079371
1-1-2/M820.945461
12-2/M820.881770.955
12-4/M820.761090.282
1-3/M821.410091
2-1-1/M820.690150.465
2-1/M821.30522
2-6/M820.942611
3-2/M820.93981
4-1-1/M820.878581
4-1/M821.117861
4-3-2/M820.95237
4-3/M821.127191
5-3/M821.041541
6-2/M821.157361
6-3/M820.962331
7-1/M821.05654
7-2/M821.00411
9-3-2/M820.909781

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.051771
IL2-6/WTpooled0.998021
IL7-5/WTpooled0.39298
IL7-3/WTpooled0.869481
IL12-4/WTpooled1.037061
IL1-4/WTpooled0.942030.834
WT/WTpooled1.10591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.901070.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.91191
DC3000/delta hrp 6h1.045481
DC3000/delta hrp 12h1.186351
DC3000/delta hrp 24h0.777590.047

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.222980.333
DC3000 delta B/DC3000 delta AB1.174930.429

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.983961
Exp 36h0.809260.426
Exp 60h0.714030.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.973231
Var 0h1.047620.936
Var 12h I row2-row11.023381
Var 12h NI row2-row11.137510.649
Var 36h I row2-row10.996931
Var 36h NI row2-row11.006411
Var 60h I row2-row10.783590.582
Var 60h NI row2-row10.99151
Time course 0hI-0hNI0.951440.659
Time course 12hI-12hNI1.015320.811
Time course 36hI-36hNI1.16640.044
Time course 60hI-60hNI0.79540.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.089020.312
transgenic ySAMdc/azygous control (breaker)1.166170.166
transgenic ySAMdc/azygous control (red)1.046520.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.916860.07

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.047020.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.304560.086
Manapal/WT (break)1.274890.381
Manapal/WT (red)1.707310.133