Expression of 1-1-3.4.14.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07569 | 0.975 |
27DAP/17DAP | 1.20152 | 0.8 |
39DAP/27DAP | 1.35798 | 0.296 |
41DAP/39DAP | 0.99029 | 0.772 |
42DAP/41DAP | 1.17727 | 0.863 |
43DAP/42DAP | 1.11686 | 0.968 |
47DAP/43DAP | 1.10861 | 0.569 |
52DAP/47DAP | 0.83306 | 0.545 |
57DAP/52DAP | 1.22536 | 0.918 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09203 | 0.366 |
17DAP/reference | 1.08027 | 0.132 |
27DAP/reference | 1.0177 | 0.771 |
39DAP/reference | 1.05915 | 0.377 |
41DAP/reference | 1.09354 | 0.062 |
42DAP/reference | 0.86736 | 0.01 |
43DAP/reference | 0.96238 | 0.346 |
47DAP/reference | 0.87443 | 0.015 |
52DAP/reference | 0.87915 | 0.037 |
57DAP/reference | 0.85753 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09273 | 0.278 |
27DAP/17DAP | 0.94561 | 0.854 |
39DAP/27DAP | 1.05122 | 0.874 |
41DAP/39DAP | 1.07789 | 0.914 |
42DAP/41DAP | 1.01954 | 1 |
43DAP/42DAP | 0.8749 | 0.172 |
47DAP/43DAP | 0.96313 | 0.855 |
52DAP/47DAP | 0.89287 | 0.269 |
57DAP/52DAP | 1.2049 | 0.654 |
57DAP/7DAP | 1.02367 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84639 | 0.095 |
17DAP/reference | 0.82865 | 0.072 |
27DAP/reference | 0.81719 | 0.071 |
39DAP/reference | 0.83271 | 0.039 |
41DAP/reference | 0.82377 | 0.079 |
42DAP/reference | 0.81551 | 0.09 |
43DAP/reference | 0.76834 | 0.011 |
47DAP/reference | 0.7776 | 0.04 |
52DAP/reference | 0.75183 | 0.023 |
57DAP/reference | 1.05184 | 0.629 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22673 | 0.09 |
17DAP/reference | 1.15101 | 0.079 |
27DAP/reference | 0.97025 | 0.483 |
39DAP/reference | 0.91408 | 0.235 |
41DAP/reference | 0.93329 | 0.268 |
42DAP/reference | 0.92129 | 0.237 |
43DAP/reference | 0.95175 | 0.45 |
47DAP/reference | 0.88515 | 0.058 |
52DAP/reference | 0.96628 | 0.407 |
57DAP/reference | 0.94465 | 0.361 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94564 | 0.455 |
17DAP/reference | 1.12031 | 0.65 |
27DAP/reference | 0.83826 | 0.063 |
39DAP/reference | 0.80286 | 0.031 |
41DAP/reference | 0.97235 | 0.56 |
42DAP/reference | 0.85508 | 0.108 |
43DAP/reference | 0.8718 | 0.04 |
47DAP/reference | 0.91443 | 0.183 |
52DAP/reference | 0.78571 | 0.084 |
57DAP/reference | 0.85046 | 0.046 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16109 | 0.966 |
26DAP/20DAP | 1.27952 | 0.265 |
34DAP/26DAP | 0.96783 | 0.954 |
51DAP/34DAP | 1.07063 | 0.84 |
52DAP/51DAP | 0.73265 | 0.151 |
53DAP/52DAP | 0.83352 | 0.455 |
55DAP/53DAP | 0.66023 | 0.045 |
57DAP/55DAP | 1.08667 | 0.935 |
62DAP/57DAP | 0.96454 | 0.871 |
68DAP/62DAP | 1.05236 | 1 |
68DAP/14DAP | 0.84577 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.83456 | 0.047 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.30311 | 0.063 |
Mature Green Tomato/Ripe Tomato | 1.95584 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.56076 | 0.062 |
Ripe Pepper/Ripe Tomato | 2.79739 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.79724 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07937 | 1 |
1-1-2/M82 | 0.94546 | 1 |
12-2/M82 | 0.88177 | 0.955 |
12-4/M82 | 0.76109 | 0.282 |
1-3/M82 | 1.41009 | 1 |
2-1-1/M82 | 0.69015 | 0.465 |
2-1/M82 | 1.30522 | |
2-6/M82 | 0.94261 | 1 |
3-2/M82 | 0.9398 | 1 |
4-1-1/M82 | 0.87858 | 1 |
4-1/M82 | 1.11786 | 1 |
4-3-2/M82 | 0.95237 | |
4-3/M82 | 1.12719 | 1 |
5-3/M82 | 1.04154 | 1 |
6-2/M82 | 1.15736 | 1 |
6-3/M82 | 0.96233 | 1 |
7-1/M82 | 1.05654 | |
7-2/M82 | 1.0041 | 1 |
9-3-2/M82 | 0.90978 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05177 | 1 |
IL2-6/WTpooled | 0.99802 | 1 |
IL7-5/WTpooled | 0.39298 | |
IL7-3/WTpooled | 0.86948 | 1 |
IL12-4/WTpooled | 1.03706 | 1 |
IL1-4/WTpooled | 0.94203 | 0.834 |
WT/WTpooled | 1.1059 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90107 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9119 | 1 |
DC3000/delta hrp 6h | 1.04548 | 1 |
DC3000/delta hrp 12h | 1.18635 | 1 |
DC3000/delta hrp 24h | 0.77759 | 0.047 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22298 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.17493 | 0.429 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98396 | 1 |
Exp 36h | 0.80926 | 0.426 |
Exp 60h | 0.71403 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97323 | 1 |
Var 0h | 1.04762 | 0.936 |
Var 12h I row2-row1 | 1.02338 | 1 |
Var 12h NI row2-row1 | 1.13751 | 0.649 |
Var 36h I row2-row1 | 0.99693 | 1 |
Var 36h NI row2-row1 | 1.00641 | 1 |
Var 60h I row2-row1 | 0.78359 | 0.582 |
Var 60h NI row2-row1 | 0.9915 | 1 |
Time course 0hI-0hNI | 0.95144 | 0.659 |
Time course 12hI-12hNI | 1.01532 | 0.811 |
Time course 36hI-36hNI | 1.1664 | 0.044 |
Time course 60hI-60hNI | 0.7954 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08902 | 0.312 |
transgenic ySAMdc/azygous control (breaker) | 1.16617 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.04652 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91686 | 0.07 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.04702 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.30456 | 0.086 |
Manapal/WT (break) | 1.27489 | 0.381 |
Manapal/WT (red) | 1.70731 | 0.133 |
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