Expression of 1-1-3.4.14.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.007010.811
27DAP/17DAP0.36740.032
39DAP/27DAP1.196790.816
41DAP/39DAP1.541330.685
42DAP/41DAP1.63090.578
43DAP/42DAP1.703040.726
47DAP/43DAP1.208980.584
52DAP/47DAP0.517950.195
57DAP/52DAP1.33950.477

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.271020.101
17DAP/reference1.759490.014
27DAP/reference1.34380.077
39DAP/reference1.380660.026
41DAP/reference1.543710.027
42DAP/reference1.837820.002
43DAP/reference1.048680.763
47DAP/reference1.613560.018
52DAP/referenceN/AN/A
57DAP/reference1.31605

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.23622
27DAP/17DAP0.72219
39DAP/27DAP0.31661
41DAP/39DAPN/AN/A
42DAP/41DAP0.949430.746
43DAP/42DAP0.86785
47DAP/43DAP1.742610.017
52DAP/47DAP0.72180.145
57DAP/52DAP0.73486
57DAP/7DAP0.27942

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.751750.024
17DAP/reference1.337180.011
27DAP/reference1.382310.008
39DAP/reference1.618750.005
41DAP/reference1.452550.025
42DAP/reference1.62860.009
43DAP/reference1.501310.009
47DAP/reference2.201020.015
52DAP/reference1.608440.046
57DAP/reference1.358630.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.484620.029
17DAP/referenceN/AN/A
27DAP/reference0.524560.327
39DAP/reference0.641070.168
41DAP/referenceN/AN/A
42DAP/reference1.4211
43DAP/reference1.011431
47DAP/referenceN/AN/A
52DAP/reference0.26682
57DAP/reference1.535450.423

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.610730.025
17DAP/reference1.034641
27DAP/reference1.360330.02
39DAP/reference1.723410.003
41DAP/reference1.227330.013
42DAP/reference1.618740.011
43DAP/reference1.730180.006
47DAP/reference0.91434
52DAP/reference1.727360.047
57DAP/reference4.50345

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.58544
26DAP/20DAP2.075960.099
34DAP/26DAP1.300810.078
51DAP/34DAP2.12551
52DAP/51DAP0.852011
53DAP/52DAP0.963360.862
55DAP/53DAP1.096630.864
57DAP/55DAP0.84322
62DAP/57DAP2.45395
68DAP/62DAP0.58009
68DAP/14DAP1.644110.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.991490.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.951940.493
IL2-6/WTpooled0.761820.358
IL7-5/WTpooled1.011211
IL7-3/WTpooled1.196651
IL12-4/WTpooled1.012460.839
IL1-4/WTpooled0.814770.699
WT/WTpooled1.026421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.002771
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A