Expression of 1-1-3.4.15.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2475 | 0.67 |
27DAP/17DAP | 3.61029 | 0.034 |
39DAP/27DAP | 2.80529 | 0.02 |
41DAP/39DAP | 0.76426 | 0.215 |
42DAP/41DAP | 1.20573 | 0.958 |
43DAP/42DAP | 1.11688 | 1 |
47DAP/43DAP | 0.85829 | 0.522 |
52DAP/47DAP | 0.64891 | 0.195 |
57DAP/52DAP | 1.23472 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79566 | 0.066 |
17DAP/reference | 0.95922 | 0.26 |
27DAP/reference | 1.04534 | 0.648 |
39DAP/reference | 1.43813 | 0.016 |
41DAP/reference | 1.15024 | 0.221 |
42DAP/reference | 1.25078 | 0.029 |
43DAP/reference | 1.08745 | 0.518 |
47DAP/reference | 1.10522 | 0.627 |
52DAP/reference | 0.96258 | 0.427 |
57DAP/reference | 1.21223 | 0.076 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24485 | 0.111 |
27DAP/17DAP | 1.18574 | 0.292 |
39DAP/27DAP | 2.59275 | 0.039 |
41DAP/39DAP | 1.03254 | 0.968 |
42DAP/41DAP | 1.08257 | 0.947 |
43DAP/42DAP | 1.2662 | 0.297 |
47DAP/43DAP | 1.29766 | 0.293 |
52DAP/47DAP | 1.11974 | 0.816 |
57DAP/52DAP | 1.14199 | 0.533 |
57DAP/7DAP | 3.90307 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70452 | 0.104 |
17DAP/reference | 0.88309 | 0.108 |
27DAP/reference | 1.41773 | 0.009 |
39DAP/reference | 0.83606 | 0.011 |
41DAP/reference | 1.05807 | 0.614 |
42DAP/reference | 1.29771 | 0.03 |
43DAP/reference | 1.16016 | 0.157 |
47DAP/reference | 1.48034 | 0.032 |
52DAP/reference | 1.22623 | 0.041 |
57DAP/reference | 1.04179 | 0.612 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89005 | 0.268 |
17DAP/reference | 1.02619 | 0.979 |
27DAP/reference | 1.50304 | 0.028 |
39DAP/reference | 1.26429 | 0.016 |
41DAP/reference | 1.44169 | 0.006 |
42DAP/reference | 1.56533 | 0.008 |
43DAP/reference | 2.09304 | 0.009 |
47DAP/reference | 1.49894 | 0.008 |
52DAP/reference | 1.0782 | 0.596 |
57DAP/reference | 1.00185 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7936 | 0.077 |
17DAP/reference | 0.97598 | 0.615 |
27DAP/reference | 1.02927 | 0.903 |
39DAP/reference | 1.23247 | 0.02 |
41DAP/reference | 1.32137 | 0.276 |
42DAP/reference | 1.67203 | 0.007 |
43DAP/reference | 1.09484 | 0.524 |
47DAP/reference | 1.73948 | 0.005 |
52DAP/reference | 1.4534 | 0.045 |
57DAP/reference | 1.17078 | 0.228 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09214 | 0.966 |
26DAP/20DAP | 0.83179 | 0.317 |
34DAP/26DAP | 1.271 | 0.819 |
51DAP/34DAP | 1.10733 | 0.988 |
52DAP/51DAP | 0.95403 | 1 |
53DAP/52DAP | 1.00348 | 1 |
55DAP/53DAP | 1.08993 | 0.722 |
57DAP/55DAP | 0.92784 | 0.67 |
62DAP/57DAP | 1.04552 | 1 |
68DAP/62DAP | 1.10625 | 1 |
68DAP/14DAP | 0.70911 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 20.5118 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.5035 | 0.133 |
Mature Green Tomato/Ripe Tomato | 0.71949 | 0.079 |
Immature Eggplant/Mature Eggplant | 1.87254 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.15536 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.08739 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.76998 | 0.651 |
1-1-2/M82 | 1.15513 | 1 |
12-2/M82 | 1.21767 | 1 |
12-4/M82 | 1.43438 | 1 |
1-3/M82 | 2.49195 | 0.26 |
2-1-1/M82 | 0.88058 | 0.465 |
2-1/M82 | 0.9697 | 1 |
2-6/M82 | 0.89303 | 0.421 |
3-2/M82 | 0.96951 | 1 |
4-1-1/M82 | 0.76905 | 1 |
4-1/M82 | 0.84283 | |
4-3-2/M82 | 0.99889 | |
4-3/M82 | 0.87988 | 0.72 |
5-3/M82 | 0.95299 | 1 |
6-2/M82 | 0.94586 | 1 |
6-3/M82 | 1.13018 | 1 |
7-1/M82 | 1.00339 | 1 |
7-2/M82 | 1.02787 | 1 |
9-3-2/M82 | 0.85444 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.85024 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.82342 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.64989 | 1 |
WT/WTpooled | 1.0081 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.7139 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10832 | 0.921 |
DC3000/delta hrp 6h | 0.84807 | 0.95 |
DC3000/delta hrp 12h | 1.24789 | 1 |
DC3000/delta hrp 24h | 0.99673 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.33688 | 0.225 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9216 | 0.265 |
Exp 36h | 2.59109 | 0.693 |
Exp 60h | 1.28838 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03472 | 1 |
Var 0h | 0.54213 | 0.261 |
Var 12h I row2-row1 | 1.10002 | 0.736 |
Var 12h NI row2-row1 | 0.99276 | 1 |
Var 36h I row2-row1 | 0.83298 | 1 |
Var 36h NI row2-row1 | 1.20816 | 0.482 |
Var 60h I row2-row1 | 1.01735 | |
Var 60h NI row2-row1 | 1.4181 | 0.904 |
Time course 0hI-0hNI | 0.99944 | 1 |
Time course 12hI-12hNI | 1.02166 | 0.827 |
Time course 36hI-36hNI | 1.04879 | 0.975 |
Time course 60hI-60hNI | 1.50121 | 0.017 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.33767 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 1.13871 | 1 |
transgenic ySAMdc/azygous control (red) | 0.9393 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.57922 | 0.031 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.21849 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92994 | 1 |
Manapal/WT (break) | 1.02801 | 1 |
Manapal/WT (red) | 0.54562 | 0.181 |
|
|