Expression of 1-1-3.4.15.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.24750.67
27DAP/17DAP3.610290.034
39DAP/27DAP2.805290.02
41DAP/39DAP0.764260.215
42DAP/41DAP1.205730.958
43DAP/42DAP1.116881
47DAP/43DAP0.858290.522
52DAP/47DAP0.648910.195
57DAP/52DAP1.234721

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.795660.066
17DAP/reference0.959220.26
27DAP/reference1.045340.648
39DAP/reference1.438130.016
41DAP/reference1.150240.221
42DAP/reference1.250780.029
43DAP/reference1.087450.518
47DAP/reference1.105220.627
52DAP/reference0.962580.427
57DAP/reference1.212230.076

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.244850.111
27DAP/17DAP1.185740.292
39DAP/27DAP2.592750.039
41DAP/39DAP1.032540.968
42DAP/41DAP1.082570.947
43DAP/42DAP1.26620.297
47DAP/43DAP1.297660.293
52DAP/47DAP1.119740.816
57DAP/52DAP1.141990.533
57DAP/7DAP3.903070.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.704520.104
17DAP/reference0.883090.108
27DAP/reference1.417730.009
39DAP/reference0.836060.011
41DAP/reference1.058070.614
42DAP/reference1.297710.03
43DAP/reference1.160160.157
47DAP/reference1.480340.032
52DAP/reference1.226230.041
57DAP/reference1.041790.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.890050.268
17DAP/reference1.026190.979
27DAP/reference1.503040.028
39DAP/reference1.264290.016
41DAP/reference1.441690.006
42DAP/reference1.565330.008
43DAP/reference2.093040.009
47DAP/reference1.498940.008
52DAP/reference1.07820.596
57DAP/reference1.001850.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.79360.077
17DAP/reference0.975980.615
27DAP/reference1.029270.903
39DAP/reference1.232470.02
41DAP/reference1.321370.276
42DAP/reference1.672030.007
43DAP/reference1.094840.524
47DAP/reference1.739480.005
52DAP/reference1.45340.045
57DAP/reference1.170780.228

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.092140.966
26DAP/20DAP0.831790.317
34DAP/26DAP1.2710.819
51DAP/34DAP1.107330.988
52DAP/51DAP0.954031
53DAP/52DAP1.003481
55DAP/53DAP1.089930.722
57DAP/55DAP0.927840.67
62DAP/57DAP1.045521
68DAP/62DAP1.106251
68DAP/14DAP0.709110.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker20.51180.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.50350.133
Mature Green Tomato/Ripe Tomato0.719490.079
Immature Eggplant/Mature Eggplant1.872540.05
Ripe Pepper/Ripe Tomato0.155360.224
Mature Eggplant/Ripe Tomato0.087390.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.769980.651
1-1-2/M821.155131
12-2/M821.217671
12-4/M821.434381
1-3/M822.491950.26
2-1-1/M820.880580.465
2-1/M820.96971
2-6/M820.893030.421
3-2/M820.969511
4-1-1/M820.769051
4-1/M820.84283
4-3-2/M820.99889
4-3/M820.879880.72
5-3/M820.952991
6-2/M820.945861
6-3/M821.130181
7-1/M821.003391
7-2/M821.027871
9-3-2/M820.854440.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.850240.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.82342
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.649891
WT/WTpooled1.00811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.7139

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.108320.921
DC3000/delta hrp 6h0.848070.95
DC3000/delta hrp 12h1.247891
DC3000/delta hrp 24h0.996731

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.336880.225

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.92160.265
Exp 36h2.591090.693
Exp 60h1.288380.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.034721
Var 0h0.542130.261
Var 12h I row2-row11.100020.736
Var 12h NI row2-row10.992761
Var 36h I row2-row10.832981
Var 36h NI row2-row11.208160.482
Var 60h I row2-row11.01735
Var 60h NI row2-row11.41810.904
Time course 0hI-0hNI0.999441
Time course 12hI-12hNI1.021660.827
Time course 36hI-36hNI1.048790.975
Time course 60hI-60hNI1.501210.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.337670.326
transgenic ySAMdc/azygous control (breaker)1.138711
transgenic ySAMdc/azygous control (red)0.93931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.579220.031

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.218490.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.929941
Manapal/WT (break)1.028011
Manapal/WT (red)0.545620.181