Expression of 1-1-3.4.16.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.926190.61
27DAP/17DAP1.458380.688
39DAP/27DAP1.593660.129
41DAP/39DAP1.100390.584
42DAP/41DAP1.045621
43DAP/42DAP0.889070.801
47DAP/43DAP1.929970.213
52DAP/47DAP0.926340.779
57DAP/52DAP1.165690.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.98520.616
17DAP/reference0.820610.025
27DAP/reference0.877440.406
39DAP/reference0.927110.284
41DAP/reference0.775180.039
42DAP/reference1.081750.182
43DAP/reference0.972660.675
47DAP/reference1.062530.509
52DAP/reference1.173930.05
57DAP/reference1.099680.31

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.785970.039
27DAP/17DAP1.067530.96
39DAP/27DAP1.204670.394
41DAP/39DAP0.803880.246
42DAP/41DAP0.998680.876
43DAP/42DAP0.653860.024
47DAP/43DAP1.132430.901
52DAP/47DAP0.850750.575
57DAP/52DAP1.342780.806
57DAP/7DAP1.008961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.189980.286
17DAP/reference1.045911
27DAP/reference1.017830.974
39DAP/reference1.192590.046
41DAP/reference1.079110.491
42DAP/reference1.255370.308
43DAP/reference1.05041
47DAP/reference0.857680.05
52DAP/reference1.026821
57DAP/reference1.02130.719

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.996670.811
17DAP/reference0.995870.728
27DAP/reference1.170110.338
39DAP/reference1.002560.621
41DAP/reference0.977530.459
42DAP/reference0.967550.482
43DAP/reference0.97090.569
47DAP/reference1.004640.812
52DAP/reference0.925890.143
57DAP/reference0.952430.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.101090.691
17DAP/reference1.120920.384
27DAP/reference1.122370.34
39DAP/reference1.062750.578
41DAP/reference1.039020.961
42DAP/reference1.182510.443
43DAP/reference1.281660.077
47DAP/reference0.89290.191
52DAP/reference1.065671
57DAP/reference1.348580.075

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.986451
26DAP/20DAP1.467240.604
34DAP/26DAP1.144191
51DAP/34DAP0.924640.807
52DAP/51DAP1.175460.821
53DAP/52DAP1.139610.868
55DAP/53DAP0.835750.544
57DAP/55DAP0.880390.664
62DAP/57DAP0.917030.681
68DAP/62DAP1.232210.864
68DAP/14DAP0.853681

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.671430.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.64177
Mature Green Tomato/Ripe Tomato0.50760.019
Immature Eggplant/Mature Eggplant1.249690.205
Ripe Pepper/Ripe Tomato0.249020.224
Mature Eggplant/Ripe Tomato0.256770.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.477480.877
1-1-2/M82N/AN/A
12-2/M820.43965
12-4/M820.98295
1-3/M821.77386
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.28088
3-2/M820.71051
4-1-1/M821.068841
4-1/M821.26453
4-3-2/M820.95372
4-3/M821.177841
5-3/M821.153291
6-2/M820.98665
6-3/M820.87555
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.95058

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.98561
IL2-6/WTpooled1.065510.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.02421
IL12-4/WTpooled1.087360.891
IL1-4/WTpooled1.195921
WT/WTpooled1.046671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.423770.177

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.102830.914
DC3000/delta hrp 6h0.887960.95
DC3000/delta hrp 12h0.55053
DC3000/delta hrp 24h1.636890.054

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB3.744020.134
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.988611
Exp 36h1.277810.489
Exp 60h1.388950.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.888571
Var 0h0.855040.933
Var 12h I row2-row11.077990.544
Var 12h NI row2-row10.954010.82
Var 36h I row2-row10.850121
Var 36h NI row2-row10.860140.743
Var 60h I row2-row10.682460.285
Var 60h NI row2-row10.749120.977
Time course 0hI-0hNI1.048261
Time course 12hI-12hNI1.223070.301
Time course 36hI-36hNI1.70870.006
Time course 60hI-60hNI6.801390.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.141220.228
transgenic ySAMdc/azygous control (breaker)2.739790.165
transgenic ySAMdc/azygous control (red)1.052321

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.264620.089

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.734420.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.613890.172
Manapal/WT (break)0.986111
Manapal/WT (red)0.82490.216