Expression of 1-1-3.4.17.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.869630.05
27DAP/17DAP0.72120.128
39DAP/27DAP0.911340.537
41DAP/39DAP1.182180.54
42DAP/41DAP1.104290.876
43DAP/42DAP0.941650.877
47DAP/43DAP1.148870.965
52DAP/47DAP1.194910.932
57DAP/52DAP1.205740.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.121910.814
17DAP/reference1.129230.74
27DAP/reference1.025331
39DAP/reference0.992170.828
41DAP/reference0.910040.341
42DAP/reference1.072820.842
43DAP/reference1.025690.957
47DAP/reference1.17050.264
52DAP/reference1.423280.015
57DAP/reference1.207490.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.365490.438
27DAP/17DAP1.380880.719
39DAP/27DAP0.687670.194
41DAP/39DAP1.425760.735
42DAP/41DAP0.929320.565
43DAP/42DAP1.045860.831
47DAP/43DAP1.048950.985
52DAP/47DAP1.416390.36
57DAP/52DAP1.078660.852
57DAP/7DAP1.297981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.736890.157
17DAP/reference0.853370.016
27DAP/reference0.982070.571
39DAP/reference0.742950.056
41DAP/reference1.048940.745
42DAP/reference0.789170.012
43DAP/reference0.794350.011
47DAP/reference1.140640.582
52DAP/reference1.262210.076
57DAP/reference0.849510.097

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.102290.767
17DAP/reference0.924340.399
27DAP/reference1.066140.79
39DAP/reference1.4030.128
41DAP/reference1.167971
42DAP/reference1.17780.118
43DAP/reference0.944220.552
47DAP/reference1.074210.639
52DAP/reference1.091660.882
57DAP/reference0.931760.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.013081
17DAP/reference1.037830.956
27DAP/reference0.865790.442
39DAP/reference1.215920.182
41DAP/reference1.43880.054
42DAP/reference1.256230.052
43DAP/reference1.520.096
47DAP/reference1.185970.207
52DAP/reference1.129280.491
57DAP/reference1.453270.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.96135
26DAP/20DAP0.682860.512
34DAP/26DAP0.897010.874
51DAP/34DAP0.879840.688
52DAP/51DAP1.343970.708
53DAP/52DAP1.0680.944
55DAP/53DAP1.085671
57DAP/55DAP0.980010.921
62DAP/57DAP1.104210.935
68DAP/62DAP1.718420.29
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.830540.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato3.10890.064
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.97370.247
IL2-6/WTpooled0.941711
IL7-5/WTpooled1.085540.792
IL7-3/WTpooled1.147330.362
IL12-4/WTpooled1.061380.673
IL1-4/WTpooled1.06011
WT/WTpooled1.003341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.129380.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.07681
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.304981
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.062751
Var 0h0.636140.239
Var 12h I row2-row11.030931
Var 12h NI row2-row11.801271
Var 36h I row2-row10.999251
Var 36h NI row2-row10.67651
Var 60h I row2-row10.761150.582
Var 60h NI row2-row10.666481
Time course 0hI-0hNI1.030830.719
Time course 12hI-12hNI0.867180.556
Time course 36hI-36hNI0.992930.654
Time course 60hI-60hNI1.215470.16

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.747220.188