TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-3.4.17.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.995960.938
27DAP/17DAP1.244190.801
39DAP/27DAP1.200250.533
41DAP/39DAP1.063251
42DAP/41DAP1.116570.941
43DAP/42DAP0.950410.877
47DAP/43DAP0.989410.879
52DAP/47DAP1.508620.281
57DAP/52DAP1.049440.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.975340.489
17DAP/reference0.851390.069
27DAP/reference1.14140.33
39DAP/reference0.796980.019
41DAP/reference0.920720.341
42DAP/reference0.956080.278
43DAP/reference0.961860.631
47DAP/reference1.128410.963
52DAP/reference1.502880.059
57DAP/reference1.513320.015

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990780.801
27DAP/17DAP1.00750.995
39DAP/27DAP1.127140.441
41DAP/39DAP1.023481
42DAP/41DAP1.050550.976
43DAP/42DAP1.062330.297
47DAP/43DAP1.04540.833
52DAP/47DAP1.033750.868
57DAP/52DAP0.884130.252
57DAP/7DAP0.835541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.857110.115
17DAP/reference0.867740.011
27DAP/reference0.838660.01
39DAP/reference0.875290.017
41DAP/reference0.879280.06
42DAP/reference0.812050.012
43DAP/reference0.824970.013
47DAP/reference1.036480.98
52DAP/reference0.794190.028
57DAP/reference0.826360.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.790310.17
17DAP/reference0.821750.031
27DAP/reference1.047310.765
39DAP/reference1.23030.073
41DAP/reference1.533680.006
42DAP/reference1.338430.009
43DAP/reference0.749280.147
47DAP/reference0.969180.473
52DAP/reference1.107370.596
57DAP/reference0.764810.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.89320.068
17DAP/reference0.948480.508
27DAP/reference0.90820.126
39DAP/reference0.823040.026
41DAP/reference0.99140.682
42DAP/reference1.080720.816
43DAP/reference1.16010.646
47DAP/reference0.951680.421
52DAP/reference0.768420.049
57DAP/reference1.717280.061

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.187511
26DAP/20DAP0.770860.244
34DAP/26DAP0.874180.539
51DAP/34DAP1.167310.232
52DAP/51DAP1.110140.313
53DAP/52DAP0.8950.544
55DAP/53DAP1.256870.172
57DAP/55DAP0.823920.286
62DAP/57DAP1.403880.185
68DAP/62DAP6.245310.077
68DAP/14DAP5.929160.023

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.883080.155

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.10578N/A
Mature Green Tomato/Ripe Tomato0.951620.611
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.75867N/A
Mature Eggplant/Ripe Tomato1.143311

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.041231
1-1-2/M820.978721
12-2/M821.131921
12-4/M821.045940.476
1-3/M821.01003N/A
2-1-1/M821.030981
2-1/M820.76553N/A
2-6/M821.052210.695
3-2/M820.957851
4-1-1/M820.979631
4-1/M820.77198N/A
4-3-2/M820.945031
4-3/M820.944661
5-3/M820.958571
6-2/M821.100180.253
6-3/M820.926870.436
7-1/M821.007471
7-2/M821.12480.385
9-3-2/M821.107191

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.868010.247
IL2-6/WTpooled1.016661
IL7-5/WTpooled0.757431
IL7-3/WTpooled0.934921
IL12-4/WTpooled0.916270.71
IL1-4/WTpooled1.046541
WT/WTpooled1.063791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.14360.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.027270.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.981831
DC3000/delta hrp 24h1.036520.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.735610.11
DC3000 delta B/DC3000 delta AB0.889570.288

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964081
Var 0h1.078451
Var 12h I row2-row10.887870.39
Var 12h NI row2-row10.950940.627
Var 36h I row2-row11.111291
Var 36h NI row2-row11.001611
Var 60h I row2-row10.985771
Var 60h NI row2-row11.013821
Time course 0hI-0hNI1.03420.764
Time course 12hI-12hNI1.010130.868
Time course 36hI-36hNI0.970570.514
Time course 60hI-60hNI0.56880.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.045851

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.703860.181