Expression of 1-1-3.4.18.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.207160.054
27DAP/17DAP0.63060.123
39DAP/27DAP1.077580.876
41DAP/39DAP0.7020.245
42DAP/41DAP0.685070.259
43DAP/42DAP0.790440.681
47DAP/43DAP0.996650.904
52DAP/47DAP1.095140.903
57DAP/52DAP1.231270.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.86380.057
17DAP/reference0.730470.008
27DAP/reference0.907390.194
39DAP/reference0.677650.01
41DAP/reference0.67650.011
42DAP/reference0.766250.001
43DAP/reference0.737530.015
47DAP/reference0.803140.004
52DAP/reference1.079460.991
57DAP/reference1.031540.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.202640.687
27DAP/17DAP0.804570.537
39DAP/27DAP0.83150.4
41DAP/39DAP1.08170.868
42DAP/41DAP0.801610.086
43DAP/42DAP1.322880.513
47DAP/43DAP1.486240.95
52DAP/47DAP1.337920.412
57DAP/52DAP1.112710.818
57DAP/7DAP1.675130.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.32890.129
17DAP/reference0.91120.144
27DAP/reference0.999590.656
39DAP/reference0.92070.17
41DAP/reference0.969410.489
42DAP/reference1.229240.534
43DAP/reference0.906990.23
47DAP/reference0.873560.293
52DAP/reference0.744130.057
57DAP/reference0.758220.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.796440.008
17DAP/reference0.819560.029
27DAP/reference0.876420.181
39DAP/reference0.950630.37
41DAP/reference0.962790.393
42DAP/reference0.885630.021
43DAP/reference0.573260.002
47DAP/reference0.732450.019
52DAP/reference0.956150.239
57DAP/reference0.745520.003

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.873020.183
17DAP/reference0.98450.668
27DAP/reference0.896480.174
39DAP/reference0.882440.122
41DAP/reference0.931610.293
42DAP/reference0.752780.028
43DAP/reference0.968030.484
47DAP/reference0.6520.005
52DAP/reference0.749150.123
57DAP/reference1.139550.73

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.681720.42
26DAP/20DAP0.799010.244
34DAP/26DAP0.938940.94
51DAP/34DAP0.972980.785
52DAP/51DAP1.380390.225
53DAP/52DAP1.23690.723
55DAP/53DAP1.085140.939
57DAP/55DAP1.256680.955
62DAP/57DAP1.228520.622
68DAP/62DAP1.840950.052
68DAP/14DAP2.008610.236

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.872540.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato5.913270.015
Immature Eggplant/Mature Eggplant9.201960.05
Ripe Pepper/Ripe Tomato1.48558
Mature Eggplant/Ripe Tomato40.3414

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.1125
IL2-6/WTpooled0.982581
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.784220.293
IL12-4/WTpooled0.708750.581
IL1-4/WTpooled1.438551
WT/WTpooled0.969111

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.2769

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.029691
DC3000/delta hrp 6h0.894540.95
DC3000/delta hrp 12h0.487921
DC3000/delta hrp 24h17.79410.023

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.228930.042
DC3000 delta B/DC3000 delta AB2.226290.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.989461
Exp 36h0.628370.539
Exp 60h0.894170.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.233391
Var 0h0.954141
Var 12h I row2-row10.926640.77
Var 12h NI row2-row10.703341
Var 36h I row2-row11.688550.742
Var 36h NI row2-row10.796890.743
Var 60h I row2-row10.684290.292
Var 60h NI row2-row10.589761
Time course 0hI-0hNI1.274980.764
Time course 12hI-12hNI1.171660.599
Time course 36hI-36hNI1.476420.651
Time course 60hI-60hNI25.88090.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.860840.299
transgenic ySAMdc/azygous control (breaker)1.2420.248
transgenic ySAMdc/azygous control (red)1.176880.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.862190.05

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.11060.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.446030.093
Manapal/WT (break)1.167371
Manapal/WT (red)0.876330.187