Expression of 1-1-3.4.18.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 3.20716 | 0.054 |
27DAP/17DAP | 0.6306 | 0.123 |
39DAP/27DAP | 1.07758 | 0.876 |
41DAP/39DAP | 0.702 | 0.245 |
42DAP/41DAP | 0.68507 | 0.259 |
43DAP/42DAP | 0.79044 | 0.681 |
47DAP/43DAP | 0.99665 | 0.904 |
52DAP/47DAP | 1.09514 | 0.903 |
57DAP/52DAP | 1.23127 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8638 | 0.057 |
17DAP/reference | 0.73047 | 0.008 |
27DAP/reference | 0.90739 | 0.194 |
39DAP/reference | 0.67765 | 0.01 |
41DAP/reference | 0.6765 | 0.011 |
42DAP/reference | 0.76625 | 0.001 |
43DAP/reference | 0.73753 | 0.015 |
47DAP/reference | 0.80314 | 0.004 |
52DAP/reference | 1.07946 | 0.991 |
57DAP/reference | 1.03154 | 0.952 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20264 | 0.687 |
27DAP/17DAP | 0.80457 | 0.537 |
39DAP/27DAP | 0.8315 | 0.4 |
41DAP/39DAP | 1.0817 | 0.868 |
42DAP/41DAP | 0.80161 | 0.086 |
43DAP/42DAP | 1.32288 | 0.513 |
47DAP/43DAP | 1.48624 | 0.95 |
52DAP/47DAP | 1.33792 | 0.412 |
57DAP/52DAP | 1.11271 | 0.818 |
57DAP/7DAP | 1.67513 | 0.207 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3289 | 0.129 |
17DAP/reference | 0.9112 | 0.144 |
27DAP/reference | 0.99959 | 0.656 |
39DAP/reference | 0.9207 | 0.17 |
41DAP/reference | 0.96941 | 0.489 |
42DAP/reference | 1.22924 | 0.534 |
43DAP/reference | 0.90699 | 0.23 |
47DAP/reference | 0.87356 | 0.293 |
52DAP/reference | 0.74413 | 0.057 |
57DAP/reference | 0.75822 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79644 | 0.008 |
17DAP/reference | 0.81956 | 0.029 |
27DAP/reference | 0.87642 | 0.181 |
39DAP/reference | 0.95063 | 0.37 |
41DAP/reference | 0.96279 | 0.393 |
42DAP/reference | 0.88563 | 0.021 |
43DAP/reference | 0.57326 | 0.002 |
47DAP/reference | 0.73245 | 0.019 |
52DAP/reference | 0.95615 | 0.239 |
57DAP/reference | 0.74552 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87302 | 0.183 |
17DAP/reference | 0.9845 | 0.668 |
27DAP/reference | 0.89648 | 0.174 |
39DAP/reference | 0.88244 | 0.122 |
41DAP/reference | 0.93161 | 0.293 |
42DAP/reference | 0.75278 | 0.028 |
43DAP/reference | 0.96803 | 0.484 |
47DAP/reference | 0.652 | 0.005 |
52DAP/reference | 0.74915 | 0.123 |
57DAP/reference | 1.13955 | 0.73 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.68172 | 0.42 |
26DAP/20DAP | 0.79901 | 0.244 |
34DAP/26DAP | 0.93894 | 0.94 |
51DAP/34DAP | 0.97298 | 0.785 |
52DAP/51DAP | 1.38039 | 0.225 |
53DAP/52DAP | 1.2369 | 0.723 |
55DAP/53DAP | 1.08514 | 0.939 |
57DAP/55DAP | 1.25668 | 0.955 |
62DAP/57DAP | 1.22852 | 0.622 |
68DAP/62DAP | 1.84095 | 0.052 |
68DAP/14DAP | 2.00861 | 0.236 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87254 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 5.91327 | 0.015 |
Immature Eggplant/Mature Eggplant | 9.20196 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.48558 | |
Mature Eggplant/Ripe Tomato | 40.3414 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1125 | |
IL2-6/WTpooled | 0.98258 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.78422 | 0.293 |
IL12-4/WTpooled | 0.70875 | 0.581 |
IL1-4/WTpooled | 1.43855 | 1 |
WT/WTpooled | 0.96911 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2769 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02969 | 1 |
DC3000/delta hrp 6h | 0.89454 | 0.95 |
DC3000/delta hrp 12h | 0.48792 | 1 |
DC3000/delta hrp 24h | 17.7941 | 0.023 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.22893 | 0.042 |
DC3000 delta B/DC3000 delta AB | 2.22629 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98946 | 1 |
Exp 36h | 0.62837 | 0.539 |
Exp 60h | 0.89417 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.23339 | 1 |
Var 0h | 0.95414 | 1 |
Var 12h I row2-row1 | 0.92664 | 0.77 |
Var 12h NI row2-row1 | 0.70334 | 1 |
Var 36h I row2-row1 | 1.68855 | 0.742 |
Var 36h NI row2-row1 | 0.79689 | 0.743 |
Var 60h I row2-row1 | 0.68429 | 0.292 |
Var 60h NI row2-row1 | 0.58976 | 1 |
Time course 0hI-0hNI | 1.27498 | 0.764 |
Time course 12hI-12hNI | 1.17166 | 0.599 |
Time course 36hI-36hNI | 1.47642 | 0.651 |
Time course 60hI-60hNI | 25.8809 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86084 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 1.242 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.17688 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.86219 | 0.05 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1106 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.44603 | 0.093 |
Manapal/WT (break) | 1.16737 | 1 |
Manapal/WT (red) | 0.87633 | 0.187 |
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