Expression of 1-1-3.4.18.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974240.77
27DAP/17DAP1.023740.922
39DAP/27DAP1.003770.899
41DAP/39DAP1.259470.223
42DAP/41DAP0.949821
43DAP/42DAP1.019251
47DAP/43DAP0.944520.799
52DAP/47DAP1.159960.651
57DAP/52DAP1.118920.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.199850.121
17DAP/reference1.085060.138
27DAP/reference1.111690.069
39DAP/reference1.163870.122
41DAP/reference1.326290.018
42DAP/reference1.356240.001
43DAP/reference0.97890.728
47DAP/reference1.240340.001
52DAP/reference1.357440.026
57DAP/reference1.219370.291

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.004431
27DAP/17DAP0.991190.943
39DAP/27DAP0.98084
41DAP/39DAP1.026390.827
42DAP/41DAP0.956210.635
43DAP/42DAP0.998051
47DAP/43DAP0.982310.909
52DAP/47DAP0.99278
57DAP/52DAP1.00050.913
57DAP/7DAP1.08975

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.831920.1
17DAP/reference0.819680.064
27DAP/reference1.009840.698
39DAP/reference1.038350.819
41DAP/reference1.046550.614
42DAP/reference0.947120.355
43DAP/reference0.934760.252
47DAP/reference1.044640.915
52DAP/reference0.802370.035
57DAP/reference0.764750.031

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.204140.217
17DAP/reference1.348360.024
27DAP/reference1.189240.323
39DAP/reference1.287280.034
41DAP/reference1.375410.043
42DAP/reference1.30940.016
43DAP/reference1.357770.027
47DAP/reference1.129150.108
52DAP/reference1.260370.01
57DAP/reference1.278090.017

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.878610.183
17DAP/reference1.04170.792
27DAP/reference0.92360.165
39DAP/reference0.859450.037
41DAP/reference1.00240.754
42DAP/reference1.073860.47
43DAP/reference1.179430.375
47DAP/reference1.002870.731
52DAP/reference0.798350.142
57DAP/reference1.188740.196

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.999211
26DAP/20DAP1.104240.718
34DAP/26DAP1.045131
51DAP/34DAP1.063040.55
52DAP/51DAP0.967191
53DAP/52DAP1.03664
55DAP/53DAP0.944890.698
57DAP/55DAP1.236340.793
62DAP/57DAP0.939460.871
68DAP/62DAP0.814890.722
68DAP/14DAP0.899491

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.073760.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.968930.673
Mature Green Tomato/Ripe Tomato1.064670.814
Immature Eggplant/Mature Eggplant1.014180.58
Ripe Pepper/Ripe Tomato1.027031
Mature Eggplant/Ripe Tomato1.483930.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.933930.944
1-1-2/M821.034231
12-2/M820.958650.955
12-4/M821.012621
1-3/M820.923330.501
2-1-1/M820.820090.465
2-1/M821.59054
2-6/M820.941241
3-2/M820.957561
4-1-1/M820.983661
4-1/M821.119861
4-3-2/M820.888020.698
4-3/M821.004271
5-3/M821.004371
6-2/M820.954981
6-3/M820.969111
7-1/M821.024150.598
7-2/M820.879040.578
9-3-2/M820.838750.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.81135
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.792110.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.054510.846
DC3000/delta hrp 6h1.096410.857
DC3000/delta hrp 12h0.978161
DC3000/delta hrp 24h1.014370.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.917220.273
DC3000 delta B/DC3000 delta AB1.010850.726

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.41970.228
Exp 36h1.220461
Exp 60h1.853910.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004691
Var 0h0.899640.933
Var 12h I row2-row11.270640.204
Var 12h NI row2-row11.021551
Var 36h I row2-row10.903311
Var 36h NI row2-row10.852750.478
Var 60h I row2-row11.166170.562
Var 60h NI row2-row11.087871
Time course 0hI-0hNI1.032951
Time course 12hI-12hNI1.035270.842
Time course 36hI-36hNI1.044130.316
Time course 60hI-60hNI1.107350.137

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.956180.614
transgenic ySAMdc/azygous control (breaker)1.217821
transgenic ySAMdc/azygous control (red)0.904821

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.871710.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.192870.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.863621
Manapal/WT (break)0.801081
Manapal/WT (red)0.954090.503