Expression of 1-1-3.4.18.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97424 | 0.77 |
27DAP/17DAP | 1.02374 | 0.922 |
39DAP/27DAP | 1.00377 | 0.899 |
41DAP/39DAP | 1.25947 | 0.223 |
42DAP/41DAP | 0.94982 | 1 |
43DAP/42DAP | 1.01925 | 1 |
47DAP/43DAP | 0.94452 | 0.799 |
52DAP/47DAP | 1.15996 | 0.651 |
57DAP/52DAP | 1.11892 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19985 | 0.121 |
17DAP/reference | 1.08506 | 0.138 |
27DAP/reference | 1.11169 | 0.069 |
39DAP/reference | 1.16387 | 0.122 |
41DAP/reference | 1.32629 | 0.018 |
42DAP/reference | 1.35624 | 0.001 |
43DAP/reference | 0.9789 | 0.728 |
47DAP/reference | 1.24034 | 0.001 |
52DAP/reference | 1.35744 | 0.026 |
57DAP/reference | 1.21937 | 0.291 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00443 | 1 |
27DAP/17DAP | 0.99119 | 0.943 |
39DAP/27DAP | 0.98084 | |
41DAP/39DAP | 1.02639 | 0.827 |
42DAP/41DAP | 0.95621 | 0.635 |
43DAP/42DAP | 0.99805 | 1 |
47DAP/43DAP | 0.98231 | 0.909 |
52DAP/47DAP | 0.99278 | |
57DAP/52DAP | 1.0005 | 0.913 |
57DAP/7DAP | 1.08975 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83192 | 0.1 |
17DAP/reference | 0.81968 | 0.064 |
27DAP/reference | 1.00984 | 0.698 |
39DAP/reference | 1.03835 | 0.819 |
41DAP/reference | 1.04655 | 0.614 |
42DAP/reference | 0.94712 | 0.355 |
43DAP/reference | 0.93476 | 0.252 |
47DAP/reference | 1.04464 | 0.915 |
52DAP/reference | 0.80237 | 0.035 |
57DAP/reference | 0.76475 | 0.031 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20414 | 0.217 |
17DAP/reference | 1.34836 | 0.024 |
27DAP/reference | 1.18924 | 0.323 |
39DAP/reference | 1.28728 | 0.034 |
41DAP/reference | 1.37541 | 0.043 |
42DAP/reference | 1.3094 | 0.016 |
43DAP/reference | 1.35777 | 0.027 |
47DAP/reference | 1.12915 | 0.108 |
52DAP/reference | 1.26037 | 0.01 |
57DAP/reference | 1.27809 | 0.017 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87861 | 0.183 |
17DAP/reference | 1.0417 | 0.792 |
27DAP/reference | 0.9236 | 0.165 |
39DAP/reference | 0.85945 | 0.037 |
41DAP/reference | 1.0024 | 0.754 |
42DAP/reference | 1.07386 | 0.47 |
43DAP/reference | 1.17943 | 0.375 |
47DAP/reference | 1.00287 | 0.731 |
52DAP/reference | 0.79835 | 0.142 |
57DAP/reference | 1.18874 | 0.196 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99921 | 1 |
26DAP/20DAP | 1.10424 | 0.718 |
34DAP/26DAP | 1.04513 | 1 |
51DAP/34DAP | 1.06304 | 0.55 |
52DAP/51DAP | 0.96719 | 1 |
53DAP/52DAP | 1.03664 | |
55DAP/53DAP | 0.94489 | 0.698 |
57DAP/55DAP | 1.23634 | 0.793 |
62DAP/57DAP | 0.93946 | 0.871 |
68DAP/62DAP | 0.81489 | 0.722 |
68DAP/14DAP | 0.89949 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07376 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96893 | 0.673 |
Mature Green Tomato/Ripe Tomato | 1.06467 | 0.814 |
Immature Eggplant/Mature Eggplant | 1.01418 | 0.58 |
Ripe Pepper/Ripe Tomato | 1.02703 | 1 |
Mature Eggplant/Ripe Tomato | 1.48393 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93393 | 0.944 |
1-1-2/M82 | 1.03423 | 1 |
12-2/M82 | 0.95865 | 0.955 |
12-4/M82 | 1.01262 | 1 |
1-3/M82 | 0.92333 | 0.501 |
2-1-1/M82 | 0.82009 | 0.465 |
2-1/M82 | 1.59054 | |
2-6/M82 | 0.94124 | 1 |
3-2/M82 | 0.95756 | 1 |
4-1-1/M82 | 0.98366 | 1 |
4-1/M82 | 1.11986 | 1 |
4-3-2/M82 | 0.88802 | 0.698 |
4-3/M82 | 1.00427 | 1 |
5-3/M82 | 1.00437 | 1 |
6-2/M82 | 0.95498 | 1 |
6-3/M82 | 0.96911 | 1 |
7-1/M82 | 1.02415 | 0.598 |
7-2/M82 | 0.87904 | 0.578 |
9-3-2/M82 | 0.83875 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.81135 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.79211 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05451 | 0.846 |
DC3000/delta hrp 6h | 1.09641 | 0.857 |
DC3000/delta hrp 12h | 0.97816 | 1 |
DC3000/delta hrp 24h | 1.01437 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.91722 | 0.273 |
DC3000 delta B/DC3000 delta AB | 1.01085 | 0.726 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.4197 | 0.228 |
Exp 36h | 1.22046 | 1 |
Exp 60h | 1.85391 | 0.215 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00469 | 1 |
Var 0h | 0.89964 | 0.933 |
Var 12h I row2-row1 | 1.27064 | 0.204 |
Var 12h NI row2-row1 | 1.02155 | 1 |
Var 36h I row2-row1 | 0.90331 | 1 |
Var 36h NI row2-row1 | 0.85275 | 0.478 |
Var 60h I row2-row1 | 1.16617 | 0.562 |
Var 60h NI row2-row1 | 1.08787 | 1 |
Time course 0hI-0hNI | 1.03295 | 1 |
Time course 12hI-12hNI | 1.03527 | 0.842 |
Time course 36hI-36hNI | 1.04413 | 0.316 |
Time course 60hI-60hNI | 1.10735 | 0.137 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95618 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 1.21782 | 1 |
transgenic ySAMdc/azygous control (red) | 0.90482 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.87171 | 0.046 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19287 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86362 | 1 |
Manapal/WT (break) | 0.80108 | 1 |
Manapal/WT (red) | 0.95409 | 0.503 |
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