Expression of 1-1-3.4.19.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.079040.938
27DAP/17DAP1.659430.62
39DAP/27DAP1.891030.103
41DAP/39DAP1.08680.715
42DAP/41DAP1.096740.938
43DAP/42DAP1.06291
47DAP/43DAP0.894870.595
52DAP/47DAP0.780090.498
57DAP/52DAP1.090520.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.702560.049
17DAP/reference1.116470.843
27DAP/reference1.087150.782
39DAP/reference0.647140.013
41DAP/reference1.332570.043
42DAP/reference1.042431
43DAP/reference0.82407
47DAP/reference0.829160.127
52DAP/reference1.196980.134
57DAP/reference0.634790.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.20170.189
27DAP/17DAP0.972040.887
39DAP/27DAP1.236370.483
41DAP/39DAP0.976150.959
42DAP/41DAP1.219750.539
43DAP/42DAP1.049970.627
47DAP/43DAP0.966280.843
52DAP/47DAP1.144190.603
57DAP/52DAP0.888670.454
57DAP/7DAP1.268291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.986970.682
17DAP/reference1.411810.045
27DAP/reference1.249110.049
39DAP/reference1.506090.015
41DAP/reference1.704870.015
42DAP/reference1.740830.008
43DAP/reference1.413210.027
47DAP/reference1.037491
52DAP/reference1.355230.025
57DAP/reference1.384340.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.662480.046
17DAP/reference0.837810.189
27DAP/reference1.157580.292
39DAP/reference0.908770.265
41DAP/reference0.954550.412
42DAP/reference1.045410.81
43DAP/reference1.009070.736
47DAP/reference0.978710.543
52DAP/reference0.986730.576
57DAP/reference0.825240.028

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.102040.493
17DAP/reference1.087610.775
27DAP/reference0.991050.727
39DAP/reference0.972050.544
41DAP/reference0.93220.459
42DAP/reference1.154890.529
43DAP/reference1.25190.092
47DAP/reference1.080650.731
52DAP/reference1.133330.526
57DAP/reference1.291780.316

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.803820.65
26DAP/20DAP0.979431
34DAP/26DAP0.893740.945
51DAP/34DAP1.334230.416
52DAP/51DAP1.027151
53DAP/52DAP1.203370.24
55DAP/53DAP1.021051
57DAP/55DAP1.013391
62DAP/57DAP1.085610.8
68DAP/62DAP1.262620.102
68DAP/14DAP1.534670.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.172090.439

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.481050.03
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.25791

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.14361
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.4212

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.21730.277
IL2-6/WTpooled0.79238
IL7-5/WTpooled0.43934
IL7-3/WTpooled1.112321
IL12-4/WTpooled0.928291
IL1-4/WTpooled0.933030.834
WT/WTpooled0.986511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.150711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.968241
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.8061
DC3000/delta hrp 24h0.838440.629

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.65587
DC3000 delta B/DC3000 delta AB1.024690.738

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.043471
Var 0h0.981071
Var 12h I row2-row10.982970.948
Var 12h NI row2-row11.329340.34
Var 36h I row2-row11.265520.298
Var 36h NI row2-row10.724560.549
Var 60h I row2-row10.55990.285
Var 60h NI row2-row10.85690.818
Time course 0hI-0hNI1.252820.486
Time course 12hI-12hNI1.036450.818
Time course 36hI-36hNI1.249160.01
Time course 60hI-60hNI2.698310.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.160340.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.186371

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.383270.14
Manapal/WT (break)0.943611
Manapal/WT (red)1.168161