Expression of 1-1-3.4.19.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07904 | 0.938 |
27DAP/17DAP | 1.65943 | 0.62 |
39DAP/27DAP | 1.89103 | 0.103 |
41DAP/39DAP | 1.0868 | 0.715 |
42DAP/41DAP | 1.09674 | 0.938 |
43DAP/42DAP | 1.0629 | 1 |
47DAP/43DAP | 0.89487 | 0.595 |
52DAP/47DAP | 0.78009 | 0.498 |
57DAP/52DAP | 1.09052 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70256 | 0.049 |
17DAP/reference | 1.11647 | 0.843 |
27DAP/reference | 1.08715 | 0.782 |
39DAP/reference | 0.64714 | 0.013 |
41DAP/reference | 1.33257 | 0.043 |
42DAP/reference | 1.04243 | 1 |
43DAP/reference | 0.82407 | |
47DAP/reference | 0.82916 | 0.127 |
52DAP/reference | 1.19698 | 0.134 |
57DAP/reference | 0.63479 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2017 | 0.189 |
27DAP/17DAP | 0.97204 | 0.887 |
39DAP/27DAP | 1.23637 | 0.483 |
41DAP/39DAP | 0.97615 | 0.959 |
42DAP/41DAP | 1.21975 | 0.539 |
43DAP/42DAP | 1.04997 | 0.627 |
47DAP/43DAP | 0.96628 | 0.843 |
52DAP/47DAP | 1.14419 | 0.603 |
57DAP/52DAP | 0.88867 | 0.454 |
57DAP/7DAP | 1.26829 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98697 | 0.682 |
17DAP/reference | 1.41181 | 0.045 |
27DAP/reference | 1.24911 | 0.049 |
39DAP/reference | 1.50609 | 0.015 |
41DAP/reference | 1.70487 | 0.015 |
42DAP/reference | 1.74083 | 0.008 |
43DAP/reference | 1.41321 | 0.027 |
47DAP/reference | 1.03749 | 1 |
52DAP/reference | 1.35523 | 0.025 |
57DAP/reference | 1.38434 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.66248 | 0.046 |
17DAP/reference | 0.83781 | 0.189 |
27DAP/reference | 1.15758 | 0.292 |
39DAP/reference | 0.90877 | 0.265 |
41DAP/reference | 0.95455 | 0.412 |
42DAP/reference | 1.04541 | 0.81 |
43DAP/reference | 1.00907 | 0.736 |
47DAP/reference | 0.97871 | 0.543 |
52DAP/reference | 0.98673 | 0.576 |
57DAP/reference | 0.82524 | 0.028 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10204 | 0.493 |
17DAP/reference | 1.08761 | 0.775 |
27DAP/reference | 0.99105 | 0.727 |
39DAP/reference | 0.97205 | 0.544 |
41DAP/reference | 0.9322 | 0.459 |
42DAP/reference | 1.15489 | 0.529 |
43DAP/reference | 1.2519 | 0.092 |
47DAP/reference | 1.08065 | 0.731 |
52DAP/reference | 1.13333 | 0.526 |
57DAP/reference | 1.29178 | 0.316 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.80382 | 0.65 |
26DAP/20DAP | 0.97943 | 1 |
34DAP/26DAP | 0.89374 | 0.945 |
51DAP/34DAP | 1.33423 | 0.416 |
52DAP/51DAP | 1.02715 | 1 |
53DAP/52DAP | 1.20337 | 0.24 |
55DAP/53DAP | 1.02105 | 1 |
57DAP/55DAP | 1.01339 | 1 |
62DAP/57DAP | 1.08561 | 0.8 |
68DAP/62DAP | 1.26262 | 0.102 |
68DAP/14DAP | 1.53467 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.17209 | 0.439 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.48105 | 0.03 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.25791 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.14361 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.4212 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.2173 | 0.277 |
IL2-6/WTpooled | 0.79238 | |
IL7-5/WTpooled | 0.43934 | |
IL7-3/WTpooled | 1.11232 | 1 |
IL12-4/WTpooled | 0.92829 | 1 |
IL1-4/WTpooled | 0.93303 | 0.834 |
WT/WTpooled | 0.98651 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15071 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96824 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.8061 | |
DC3000/delta hrp 24h | 0.83844 | 0.629 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.65587 | |
DC3000 delta B/DC3000 delta AB | 1.02469 | 0.738 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04347 | 1 |
Var 0h | 0.98107 | 1 |
Var 12h I row2-row1 | 0.98297 | 0.948 |
Var 12h NI row2-row1 | 1.32934 | 0.34 |
Var 36h I row2-row1 | 1.26552 | 0.298 |
Var 36h NI row2-row1 | 0.72456 | 0.549 |
Var 60h I row2-row1 | 0.5599 | 0.285 |
Var 60h NI row2-row1 | 0.8569 | 0.818 |
Time course 0hI-0hNI | 1.25282 | 0.486 |
Time course 12hI-12hNI | 1.03645 | 0.818 |
Time course 36hI-36hNI | 1.24916 | 0.01 |
Time course 60hI-60hNI | 2.69831 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16034 | 0.083 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.18637 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.38327 | 0.14 |
Manapal/WT (break) | 0.94361 | 1 |
Manapal/WT (red) | 1.16816 | 1 |
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