Expression of 1-1-3.4.19.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05987 | 0.891 |
27DAP/17DAP | 0.87214 | 0.683 |
39DAP/27DAP | 1.23072 | 0.75 |
41DAP/39DAP | 1.18811 | 0.591 |
42DAP/41DAP | 0.9536 | 1 |
43DAP/42DAP | 0.92263 | 0.834 |
47DAP/43DAP | 0.83372 | 0.487 |
52DAP/47DAP | 0.78158 | 0.486 |
57DAP/52DAP | 0.98556 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93678 | 0.465 |
17DAP/reference | 0.94077 | 0.474 |
27DAP/reference | 1.06132 | 0.782 |
39DAP/reference | 0.79053 | 0.159 |
41DAP/reference | 0.86301 | 0.154 |
42DAP/reference | 0.97699 | 0.398 |
43DAP/reference | 1.03856 | 0.928 |
47DAP/reference | 1.12092 | 0.728 |
52DAP/reference | 1.27448 | 0.407 |
57DAP/reference | 1.30307 | 0.052 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05254 | 0.785 |
27DAP/17DAP | 1.02882 | 0.945 |
39DAP/27DAP | 1.09865 | 0.388 |
41DAP/39DAP | 1.01642 | 1 |
42DAP/41DAP | 1.02189 | 0.961 |
43DAP/42DAP | 1.09608 | 0.324 |
47DAP/43DAP | 1.01103 | 0.951 |
52DAP/47DAP | 0.99518 | 0.951 |
57DAP/52DAP | 1.00867 | 1 |
57DAP/7DAP | 0.99954 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08114 | 0.705 |
17DAP/reference | 1.2023 | 0.134 |
27DAP/reference | 1.25213 | 0.023 |
39DAP/reference | 1.38656 | 0.012 |
41DAP/reference | 1.23384 | 0.314 |
42DAP/reference | 1.38247 | 0.076 |
43DAP/reference | 1.27999 | 0.105 |
47DAP/reference | 1.20079 | 0.582 |
52DAP/reference | 1.15024 | 0.459 |
57DAP/reference | 1.16985 | 0.698 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78988 | 0.268 |
17DAP/reference | 0.59599 | 0.023 |
27DAP/reference | 1.01615 | 1 |
39DAP/reference | 0.96798 | 0.469 |
41DAP/reference | 1.29408 | 0.162 |
42DAP/reference | 0.97217 | 0.482 |
43DAP/reference | 0.87657 | 0.212 |
47DAP/reference | 0.89901 | 0.277 |
52DAP/reference | 0.60196 | 0.006 |
57DAP/reference | 0.6948 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13035 | 0.408 |
17DAP/reference | 1.10917 | 0.384 |
27DAP/reference | 1.09668 | 0.596 |
39DAP/reference | 0.97459 | 0.464 |
41DAP/reference | 0.94262 | 0.331 |
42DAP/reference | 1.07395 | 0.55 |
43DAP/reference | 1.01118 | 0.767 |
47DAP/reference | 0.96136 | 0.525 |
52DAP/reference | 1.07094 | 0.888 |
57DAP/reference | 1.16898 | 0.291 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90546 | 1 |
26DAP/20DAP | 0.99336 | 1 |
34DAP/26DAP | 1.08679 | 0.819 |
51DAP/34DAP | 0.93894 | 0.571 |
52DAP/51DAP | 0.8703 | 0.151 |
53DAP/52DAP | 1.10772 | 0.444 |
55DAP/53DAP | 1.00643 | 0.964 |
57DAP/55DAP | 1.32874 | 0.178 |
62DAP/57DAP | 1.02784 | 1 |
68DAP/62DAP | 0.93079 | 0.345 |
68DAP/14DAP | 1.39697 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94581 | 0.422 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.46443 | 0.166 |
Immature Eggplant/Mature Eggplant | 1.71915 | 0.157 |
Ripe Pepper/Ripe Tomato | 0.78992 | 1 |
Mature Eggplant/Ripe Tomato | 1.62387 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 0.85405 | |
12-4/M82 | 0.93868 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.00645 | |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | 1.29189 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.94576 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.51452 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.36728 | 1 |
IL12-4/WTpooled | 1.29402 | |
IL1-4/WTpooled | 0.91989 | 0.834 |
WT/WTpooled | 2.17751 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94189 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00019 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.41804 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07439 | |
DC3000 delta B/DC3000 delta AB | 1.04996 | 0.528 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.2242 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01885 | 1 |
Var 0h | 1.13952 | 1 |
Var 12h I row2-row1 | 0.98815 | 0.856 |
Var 12h NI row2-row1 | 0.88114 | 0.713 |
Var 36h I row2-row1 | 1.02513 | 1 |
Var 36h NI row2-row1 | 0.79018 | 0.469 |
Var 60h I row2-row1 | 0.88787 | 0.582 |
Var 60h NI row2-row1 | 1.09156 | 0.904 |
Time course 0hI-0hNI | 1.02303 | 0.833 |
Time course 12hI-12hNI | 1.03055 | 0.724 |
Time course 36hI-36hNI | 1.15852 | 0.009 |
Time course 60hI-60hNI | 1.56264 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97475 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 0.97588 | 1 |
transgenic ySAMdc/azygous control (red) | 0.89351 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.38121 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95609 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98242 | 1 |
Manapal/WT (break) | 0.96278 | 1 |
Manapal/WT (red) | 0.82734 | 0.274 |
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