Expression of 1-1-3.4.19.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.059870.891
27DAP/17DAP0.872140.683
39DAP/27DAP1.230720.75
41DAP/39DAP1.188110.591
42DAP/41DAP0.95361
43DAP/42DAP0.922630.834
47DAP/43DAP0.833720.487
52DAP/47DAP0.781580.486
57DAP/52DAP0.985560.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.936780.465
17DAP/reference0.940770.474
27DAP/reference1.061320.782
39DAP/reference0.790530.159
41DAP/reference0.863010.154
42DAP/reference0.976990.398
43DAP/reference1.038560.928
47DAP/reference1.120920.728
52DAP/reference1.274480.407
57DAP/reference1.303070.052

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.052540.785
27DAP/17DAP1.028820.945
39DAP/27DAP1.098650.388
41DAP/39DAP1.016421
42DAP/41DAP1.021890.961
43DAP/42DAP1.096080.324
47DAP/43DAP1.011030.951
52DAP/47DAP0.995180.951
57DAP/52DAP1.008671
57DAP/7DAP0.999541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.081140.705
17DAP/reference1.20230.134
27DAP/reference1.252130.023
39DAP/reference1.386560.012
41DAP/reference1.233840.314
42DAP/reference1.382470.076
43DAP/reference1.279990.105
47DAP/reference1.200790.582
52DAP/reference1.150240.459
57DAP/reference1.169850.698

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.789880.268
17DAP/reference0.595990.023
27DAP/reference1.016151
39DAP/reference0.967980.469
41DAP/reference1.294080.162
42DAP/reference0.972170.482
43DAP/reference0.876570.212
47DAP/reference0.899010.277
52DAP/reference0.601960.006
57DAP/reference0.69480.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.130350.408
17DAP/reference1.109170.384
27DAP/reference1.096680.596
39DAP/reference0.974590.464
41DAP/reference0.942620.331
42DAP/reference1.073950.55
43DAP/reference1.011180.767
47DAP/reference0.961360.525
52DAP/reference1.070940.888
57DAP/reference1.168980.291

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.905461
26DAP/20DAP0.993361
34DAP/26DAP1.086790.819
51DAP/34DAP0.938940.571
52DAP/51DAP0.87030.151
53DAP/52DAP1.107720.444
55DAP/53DAP1.006430.964
57DAP/55DAP1.328740.178
62DAP/57DAP1.027841
68DAP/62DAP0.930790.345
68DAP/14DAP1.39697

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.945810.422

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.464430.166
Immature Eggplant/Mature Eggplant1.719150.157
Ripe Pepper/Ripe Tomato0.789921
Mature Eggplant/Ripe Tomato1.623870.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M820.85405
12-4/M820.93868
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M821.00645
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M821.29189
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.94576

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.514520.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.367281
IL12-4/WTpooled1.29402
IL1-4/WTpooled0.919890.834
WT/WTpooled2.177511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.941890.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.000191
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.418040.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.07439
DC3000 delta B/DC3000 delta AB1.049960.528

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.22420.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018851
Var 0h1.139521
Var 12h I row2-row10.988150.856
Var 12h NI row2-row10.881140.713
Var 36h I row2-row11.025131
Var 36h NI row2-row10.790180.469
Var 60h I row2-row10.887870.582
Var 60h NI row2-row11.091560.904
Time course 0hI-0hNI1.023030.833
Time course 12hI-12hNI1.030550.724
Time course 36hI-36hNI1.158520.009
Time course 60hI-60hNI1.562640.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.974750.789
transgenic ySAMdc/azygous control (breaker)0.975881
transgenic ySAMdc/azygous control (red)0.893511

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.381210.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.956090.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.982421
Manapal/WT (break)0.962781
Manapal/WT (red)0.827340.274