Expression of 1-1-3.4.19.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.989790.858
27DAP/17DAP0.919690.819
39DAP/27DAP1.581480.12
41DAP/39DAP0.597640.047
42DAP/41DAP1.473650.806
43DAP/42DAP0.895890.807
47DAP/43DAP0.656680.14
52DAP/47DAP0.715310.364
57DAP/52DAP1.706640.524

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.597010.009
17DAP/reference1.399610.034
27DAP/reference0.962530.61
39DAP/reference1.181820.119
41DAP/reference1.374830.043
42DAP/reference1.932440.001
43DAP/reference1.117560.038
47DAP/reference1.131680.069
52DAP/reference0.902920.183
57DAP/reference1.048170.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.359710.058
27DAP/17DAP0.973360.854
39DAP/27DAP0.856810.058
41DAP/39DAP1.148890.674
42DAP/41DAP1.000490.924
43DAP/42DAP0.848480.032
47DAP/43DAP0.982130.902
52DAP/47DAP0.824870.115
57DAP/52DAP1.098490.654
57DAP/7DAP0.737921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.719570.027
17DAP/reference1.831430.006
27DAP/reference2.039930.006
39DAP/reference2.139720.005
41DAP/reference1.843130.008
42DAP/reference1.880320.006
43DAP/reference1.454460.006
47DAP/reference1.485490.015
52DAP/reference1.910750.058
57DAP/reference1.804930.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.535830.087
17DAP/reference2.168390.009
27DAP/reference1.915740.018
39DAP/reference2.231590.011
41DAP/reference2.206440.005
42DAP/reference1.963790.007
43DAP/reference1.685220.135
47DAP/reference1.915430.008
52DAP/reference1.272920.029
57DAP/reference1.500310.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.502250.015
17DAP/reference1.261620.365
27DAP/reference1.625360.015
39DAP/reference1.695210.005
41DAP/reference1.714160.006
42DAP/reference1.772190.007
43DAP/reference1.956760.027
47DAP/referenceN/AN/A
52DAP/reference1.520630.098
57DAP/reference1.858250.005

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.349260.966
26DAP/20DAP1.298950.449
34DAP/26DAP1.247940.819
51DAP/34DAP1.090260.898
52DAP/51DAP0.865951
53DAP/52DAP0.753250.083
55DAP/53DAP0.933620.619
57DAP/55DAP0.952580.78
62DAP/57DAP1.018791
68DAP/62DAP0.823870.263
68DAP/14DAP0.663780.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.879130.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.982740.805
Mature Green Tomato/Ripe Tomato2.017010.034
Immature Eggplant/Mature Eggplant1.294210.061
Ripe Pepper/Ripe Tomato0.720550.293
Mature Eggplant/Ripe Tomato2.791380.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.753660.512
1-1-2/M821.001421
12-2/M820.884160.727
12-4/M820.926990.358
1-3/M82N/AN/A
2-1-1/M821.068470.764
2-1/M820.9807
2-6/M821.053030.355
3-2/M821.08017
4-1-1/M821.29989
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.256691
5-3/M821.125671
6-2/M821.29815
6-3/M820.917481
7-1/M820.83957
7-2/M821.199891
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.418960.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.182720.792
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.864410.834
WT/WTpooled0.85338

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.986311

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.083320.914
DC3000/delta hrp 6h0.936640.95
DC3000/delta hrp 12h1.135991
DC3000/delta hrp 24h0.635470.044

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.183440.087
DC3000 delta B/DC3000 delta AB1.010010.771

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.006051
Exp 36h1.116921
Exp 60h1.058721

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008791
Var 0h1.054370.98
Var 12h I row2-row10.954520.77
Var 12h NI row2-row11.001191
Var 36h I row2-row11.281420.489
Var 36h NI row2-row10.791040.329
Var 60h I row2-row11.033731
Var 60h NI row2-row10.780530.301
Time course 0hI-0hNI0.875590.122
Time course 12hI-12hNI1.068580.287
Time course 36hI-36hNI1.258050.114
Time course 60hI-60hNI1.12460.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.953830.409
transgenic ySAMdc/azygous control (breaker)1.055840.248
transgenic ySAMdc/azygous control (red)1.137270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.144930.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.9460.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.760170.172
Manapal/WT (break)0.901441
Manapal/WT (red)1.217230.222