Expression of 1-1-3.4.19.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98979 | 0.858 |
27DAP/17DAP | 0.91969 | 0.819 |
39DAP/27DAP | 1.58148 | 0.12 |
41DAP/39DAP | 0.59764 | 0.047 |
42DAP/41DAP | 1.47365 | 0.806 |
43DAP/42DAP | 0.89589 | 0.807 |
47DAP/43DAP | 0.65668 | 0.14 |
52DAP/47DAP | 0.71531 | 0.364 |
57DAP/52DAP | 1.70664 | 0.524 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.59701 | 0.009 |
17DAP/reference | 1.39961 | 0.034 |
27DAP/reference | 0.96253 | 0.61 |
39DAP/reference | 1.18182 | 0.119 |
41DAP/reference | 1.37483 | 0.043 |
42DAP/reference | 1.93244 | 0.001 |
43DAP/reference | 1.11756 | 0.038 |
47DAP/reference | 1.13168 | 0.069 |
52DAP/reference | 0.90292 | 0.183 |
57DAP/reference | 1.04817 | 0.802 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35971 | 0.058 |
27DAP/17DAP | 0.97336 | 0.854 |
39DAP/27DAP | 0.85681 | 0.058 |
41DAP/39DAP | 1.14889 | 0.674 |
42DAP/41DAP | 1.00049 | 0.924 |
43DAP/42DAP | 0.84848 | 0.032 |
47DAP/43DAP | 0.98213 | 0.902 |
52DAP/47DAP | 0.82487 | 0.115 |
57DAP/52DAP | 1.09849 | 0.654 |
57DAP/7DAP | 0.73792 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.71957 | 0.027 |
17DAP/reference | 1.83143 | 0.006 |
27DAP/reference | 2.03993 | 0.006 |
39DAP/reference | 2.13972 | 0.005 |
41DAP/reference | 1.84313 | 0.008 |
42DAP/reference | 1.88032 | 0.006 |
43DAP/reference | 1.45446 | 0.006 |
47DAP/reference | 1.48549 | 0.015 |
52DAP/reference | 1.91075 | 0.058 |
57DAP/reference | 1.80493 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53583 | 0.087 |
17DAP/reference | 2.16839 | 0.009 |
27DAP/reference | 1.91574 | 0.018 |
39DAP/reference | 2.23159 | 0.011 |
41DAP/reference | 2.20644 | 0.005 |
42DAP/reference | 1.96379 | 0.007 |
43DAP/reference | 1.68522 | 0.135 |
47DAP/reference | 1.91543 | 0.008 |
52DAP/reference | 1.27292 | 0.029 |
57DAP/reference | 1.50031 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50225 | 0.015 |
17DAP/reference | 1.26162 | 0.365 |
27DAP/reference | 1.62536 | 0.015 |
39DAP/reference | 1.69521 | 0.005 |
41DAP/reference | 1.71416 | 0.006 |
42DAP/reference | 1.77219 | 0.007 |
43DAP/reference | 1.95676 | 0.027 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.52063 | 0.098 |
57DAP/reference | 1.85825 | 0.005 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.34926 | 0.966 |
26DAP/20DAP | 1.29895 | 0.449 |
34DAP/26DAP | 1.24794 | 0.819 |
51DAP/34DAP | 1.09026 | 0.898 |
52DAP/51DAP | 0.86595 | 1 |
53DAP/52DAP | 0.75325 | 0.083 |
55DAP/53DAP | 0.93362 | 0.619 |
57DAP/55DAP | 0.95258 | 0.78 |
62DAP/57DAP | 1.01879 | 1 |
68DAP/62DAP | 0.82387 | 0.263 |
68DAP/14DAP | 0.66378 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.87913 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98274 | 0.805 |
Mature Green Tomato/Ripe Tomato | 2.01701 | 0.034 |
Immature Eggplant/Mature Eggplant | 1.29421 | 0.061 |
Ripe Pepper/Ripe Tomato | 0.72055 | 0.293 |
Mature Eggplant/Ripe Tomato | 2.79138 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75366 | 0.512 |
1-1-2/M82 | 1.00142 | 1 |
12-2/M82 | 0.88416 | 0.727 |
12-4/M82 | 0.92699 | 0.358 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.06847 | 0.764 |
2-1/M82 | 0.9807 | |
2-6/M82 | 1.05303 | 0.355 |
3-2/M82 | 1.08017 | |
4-1-1/M82 | 1.29989 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.25669 | 1 |
5-3/M82 | 1.12567 | 1 |
6-2/M82 | 1.29815 | |
6-3/M82 | 0.91748 | 1 |
7-1/M82 | 0.83957 | |
7-2/M82 | 1.19989 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.41896 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.18272 | 0.792 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.86441 | 0.834 |
WT/WTpooled | 0.85338 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98631 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08332 | 0.914 |
DC3000/delta hrp 6h | 0.93664 | 0.95 |
DC3000/delta hrp 12h | 1.13599 | 1 |
DC3000/delta hrp 24h | 0.63547 | 0.044 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.18344 | 0.087 |
DC3000 delta B/DC3000 delta AB | 1.01001 | 0.771 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00605 | 1 |
Exp 36h | 1.11692 | 1 |
Exp 60h | 1.05872 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00879 | 1 |
Var 0h | 1.05437 | 0.98 |
Var 12h I row2-row1 | 0.95452 | 0.77 |
Var 12h NI row2-row1 | 1.00119 | 1 |
Var 36h I row2-row1 | 1.28142 | 0.489 |
Var 36h NI row2-row1 | 0.79104 | 0.329 |
Var 60h I row2-row1 | 1.03373 | 1 |
Var 60h NI row2-row1 | 0.78053 | 0.301 |
Time course 0hI-0hNI | 0.87559 | 0.122 |
Time course 12hI-12hNI | 1.06858 | 0.287 |
Time course 36hI-36hNI | 1.25805 | 0.114 |
Time course 60hI-60hNI | 1.1246 | 0.302 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95383 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 1.05584 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.13727 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14493 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.946 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76017 | 0.172 |
Manapal/WT (break) | 0.90144 | 1 |
Manapal/WT (red) | 1.21723 | 0.222 |
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