Expression of 1-1-3.4.19.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.226590.561
27DAP/17DAP0.600850.071
39DAP/27DAP0.900250.641
41DAP/39DAP0.897430.566
42DAP/41DAP0.808080.397
43DAP/42DAP1.229060.714
47DAP/43DAP0.794930.382
52DAP/47DAP0.873660.639
57DAP/52DAP1.261370.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.25840.139
17DAP/reference1.299170.061
27DAP/reference1.194580.239
39DAP/reference1.272290.203
41DAP/reference1.720230.021
42DAP/reference1.235110.01
43DAP/reference1.020821
47DAP/reference1.094420.044
52DAP/reference1.17650.149
57DAP/reference1.03890.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.765790.112
27DAP/17DAP0.962750.887
39DAP/27DAP1.108590.677
41DAP/39DAP1.204620.849
42DAP/41DAP1.191330.514
43DAP/42DAP0.598610.022
47DAP/43DAP1.009050.857
52DAP/47DAP4.047630.036
57DAP/52DAP3.56790.03
57DAP/7DAP7.923691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.800470.073
17DAP/reference0.880140.049
27DAP/reference0.837030.01
39DAP/reference0.841660.012
41DAP/reference0.914470.174
42DAP/reference0.81720.017
43DAP/reference0.803590.011
47DAP/reference0.948820.671
52DAP/reference0.796760.012
57DAP/reference0.792140.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.247380.084
17DAP/reference1.450470.01
27DAP/reference1.216730.083
39DAP/reference1.214130.087
41DAP/reference1.195620.021
42DAP/reference1.311470.008
43DAP/reference1.4140.022
47DAP/reference1.253740.029
52DAP/reference1.280160.038
57DAP/reference1.37250.072

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.911310.23
17DAP/reference1.155310.298
27DAP/reference0.916390.047
39DAP/reference0.900590.179
41DAP/reference0.971010.56
42DAP/reference0.892090.22
43DAP/reference1.036880.827
47DAP/reference1.065710.76
52DAP/reference0.78140.101
57DAP/reference0.723820.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.102921
26DAP/20DAP6.859150.322
34DAP/26DAP5.972981
51DAP/34DAP2.394320.785
52DAP/51DAP8.789650.033
53DAP/52DAP0.462840.049
55DAP/53DAP1.724920.039
57DAP/55DAP0.778390.423
62DAP/57DAP1.264710.8
68DAP/62DAP1.870540.831
68DAP/14DAP0.788050.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.117840.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato6.547560.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.41852
Mature Eggplant/Ripe Tomato0.546720.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.100980.877
1-1-2/M821.041951
12-2/M821.06692
12-4/M820.991590.619
1-3/M820.874890.441
2-1-1/M820.903140.465
2-1/M821.01688
2-6/M820.98531
3-2/M821.07138
4-1-1/M821.047591
4-1/M820.83683
4-3-2/M821.07760.246
4-3/M820.976670.72
5-3/M821.063061
6-2/M820.98121
6-3/M820.908350.982
7-1/M821.03888
7-2/M820.90110.599
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.39353
IL2-6/WTpooled0.877731
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.007241
IL12-4/WTpooled1.244040.538
IL1-4/WTpooled1.217551
WT/WTpooled0.990321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.137461

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.951771
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.05371
DC3000/delta hrp 24h1.022450.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.911750.413
DC3000 delta B/DC3000 delta AB0.848630.063

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988611
Var 0h1.021481
Var 12h I row2-row10.767020.353
Var 12h NI row2-row10.972850.82
Var 36h I row2-row10.823930.575
Var 36h NI row2-row11.078641
Var 60h I row2-row10.889660.832
Var 60h NI row2-row10.967541
Time course 0hI-0hNI0.984130.961
Time course 12hI-12hNI1.048960.58
Time course 36hI-36hNI0.909420.047
Time course 60hI-60hNI0.364690.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.030891
transgenic ySAMdc/azygous control (red)0.760231

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.842290.07

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.714790.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.246321
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.160910.413