Expression of 1-1-3.4.19.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22659 | 0.561 |
27DAP/17DAP | 0.60085 | 0.071 |
39DAP/27DAP | 0.90025 | 0.641 |
41DAP/39DAP | 0.89743 | 0.566 |
42DAP/41DAP | 0.80808 | 0.397 |
43DAP/42DAP | 1.22906 | 0.714 |
47DAP/43DAP | 0.79493 | 0.382 |
52DAP/47DAP | 0.87366 | 0.639 |
57DAP/52DAP | 1.26137 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2584 | 0.139 |
17DAP/reference | 1.29917 | 0.061 |
27DAP/reference | 1.19458 | 0.239 |
39DAP/reference | 1.27229 | 0.203 |
41DAP/reference | 1.72023 | 0.021 |
42DAP/reference | 1.23511 | 0.01 |
43DAP/reference | 1.02082 | 1 |
47DAP/reference | 1.09442 | 0.044 |
52DAP/reference | 1.1765 | 0.149 |
57DAP/reference | 1.0389 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76579 | 0.112 |
27DAP/17DAP | 0.96275 | 0.887 |
39DAP/27DAP | 1.10859 | 0.677 |
41DAP/39DAP | 1.20462 | 0.849 |
42DAP/41DAP | 1.19133 | 0.514 |
43DAP/42DAP | 0.59861 | 0.022 |
47DAP/43DAP | 1.00905 | 0.857 |
52DAP/47DAP | 4.04763 | 0.036 |
57DAP/52DAP | 3.5679 | 0.03 |
57DAP/7DAP | 7.92369 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80047 | 0.073 |
17DAP/reference | 0.88014 | 0.049 |
27DAP/reference | 0.83703 | 0.01 |
39DAP/reference | 0.84166 | 0.012 |
41DAP/reference | 0.91447 | 0.174 |
42DAP/reference | 0.8172 | 0.017 |
43DAP/reference | 0.80359 | 0.011 |
47DAP/reference | 0.94882 | 0.671 |
52DAP/reference | 0.79676 | 0.012 |
57DAP/reference | 0.79214 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24738 | 0.084 |
17DAP/reference | 1.45047 | 0.01 |
27DAP/reference | 1.21673 | 0.083 |
39DAP/reference | 1.21413 | 0.087 |
41DAP/reference | 1.19562 | 0.021 |
42DAP/reference | 1.31147 | 0.008 |
43DAP/reference | 1.414 | 0.022 |
47DAP/reference | 1.25374 | 0.029 |
52DAP/reference | 1.28016 | 0.038 |
57DAP/reference | 1.3725 | 0.072 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91131 | 0.23 |
17DAP/reference | 1.15531 | 0.298 |
27DAP/reference | 0.91639 | 0.047 |
39DAP/reference | 0.90059 | 0.179 |
41DAP/reference | 0.97101 | 0.56 |
42DAP/reference | 0.89209 | 0.22 |
43DAP/reference | 1.03688 | 0.827 |
47DAP/reference | 1.06571 | 0.76 |
52DAP/reference | 0.7814 | 0.101 |
57DAP/reference | 0.72382 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10292 | 1 |
26DAP/20DAP | 6.85915 | 0.322 |
34DAP/26DAP | 5.97298 | 1 |
51DAP/34DAP | 2.39432 | 0.785 |
52DAP/51DAP | 8.78965 | 0.033 |
53DAP/52DAP | 0.46284 | 0.049 |
55DAP/53DAP | 1.72492 | 0.039 |
57DAP/55DAP | 0.77839 | 0.423 |
62DAP/57DAP | 1.26471 | 0.8 |
68DAP/62DAP | 1.87054 | 0.831 |
68DAP/14DAP | 0.78805 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.11784 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 6.54756 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.41852 | |
Mature Eggplant/Ripe Tomato | 0.54672 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10098 | 0.877 |
1-1-2/M82 | 1.04195 | 1 |
12-2/M82 | 1.06692 | |
12-4/M82 | 0.99159 | 0.619 |
1-3/M82 | 0.87489 | 0.441 |
2-1-1/M82 | 0.90314 | 0.465 |
2-1/M82 | 1.01688 | |
2-6/M82 | 0.9853 | 1 |
3-2/M82 | 1.07138 | |
4-1-1/M82 | 1.04759 | 1 |
4-1/M82 | 0.83683 | |
4-3-2/M82 | 1.0776 | 0.246 |
4-3/M82 | 0.97667 | 0.72 |
5-3/M82 | 1.06306 | 1 |
6-2/M82 | 0.9812 | 1 |
6-3/M82 | 0.90835 | 0.982 |
7-1/M82 | 1.03888 | |
7-2/M82 | 0.9011 | 0.599 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.39353 | |
IL2-6/WTpooled | 0.87773 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.00724 | 1 |
IL12-4/WTpooled | 1.24404 | 0.538 |
IL1-4/WTpooled | 1.21755 | 1 |
WT/WTpooled | 0.99032 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13746 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95177 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.0537 | 1 |
DC3000/delta hrp 24h | 1.02245 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.91175 | 0.413 |
DC3000 delta B/DC3000 delta AB | 0.84863 | 0.063 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98861 | 1 |
Var 0h | 1.02148 | 1 |
Var 12h I row2-row1 | 0.76702 | 0.353 |
Var 12h NI row2-row1 | 0.97285 | 0.82 |
Var 36h I row2-row1 | 0.82393 | 0.575 |
Var 36h NI row2-row1 | 1.07864 | 1 |
Var 60h I row2-row1 | 0.88966 | 0.832 |
Var 60h NI row2-row1 | 0.96754 | 1 |
Time course 0hI-0hNI | 0.98413 | 0.961 |
Time course 12hI-12hNI | 1.04896 | 0.58 |
Time course 36hI-36hNI | 0.90942 | 0.047 |
Time course 60hI-60hNI | 0.36469 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.03089 | 1 |
transgenic ySAMdc/azygous control (red) | 0.76023 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.84229 | 0.07 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.71479 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.24632 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.16091 | 0.413 |
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