Expression of 1-1-3.4.2.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.135650.851
27DAP/17DAP0.85160.611
39DAP/27DAP1.816280.038
41DAP/39DAP0.536790.041
42DAP/41DAP1.086751
43DAP/42DAP1.156411
47DAP/43DAP0.865630.562
52DAP/47DAP0.779040.476
57DAP/52DAP1.295040.95

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.220490.162
17DAP/reference1.240080.185
27DAP/reference1.144280.135
39DAP/reference1.274540.294
41DAP/reference0.990270.814
42DAP/reference1.489220.001
43DAP/reference1.359020.008
47DAP/reference1.507560.001
52DAP/reference0.860570.115
57DAP/reference1.124640.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.579180.036
27DAP/17DAP1.02780.957
39DAP/27DAP0.789630.094
41DAP/39DAP1.640990.799
42DAP/41DAP0.998690.784
43DAP/42DAP0.861120.181
47DAP/43DAP0.995360.985
52DAP/47DAP0.906340.389
57DAP/52DAP0.930610.466
57DAP/7DAP0.915841

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.794610.024
17DAP/reference2.048460.007
27DAP/reference2.200850.006
39DAP/reference1.987250.005
41DAP/reference1.854290.008
42DAP/reference2.302290.006
43DAP/reference1.96220.006
47DAP/reference1.846340.014
52DAP/reference2.61480.007
57DAP/reference2.207090.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.843680.257
17DAP/reference1.33740.063
27DAP/reference1.566350.026
39DAP/reference1.458820.056
41DAP/reference1.519370.005
42DAP/reference1.588640.007
43DAP/reference0.934740.344
47DAP/reference1.498950.009
52DAP/reference0.869010.101
57DAP/reference0.905910.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.501310.056
17DAP/reference1.359010.241
27DAP/reference1.700380.036
39DAP/reference1.889430.005
41DAP/reference1.853980.006
42DAP/reference2.048210.006
43DAP/reference1.988690.021
47DAP/reference1.198510.309
52DAP/reference1.711080.053
57DAP/reference1.456110.013

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.087050.966
26DAP/20DAP1.471150.325
34DAP/26DAP1.006941
51DAP/34DAP0.780050.147
52DAP/51DAP0.760150.151
53DAP/52DAP0.887080.288
55DAP/53DAP0.809840.072
57DAP/55DAP1.205490.324
62DAP/57DAP0.757740.28
68DAP/62DAP0.836750.7
68DAP/14DAP1.37570.265

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.415410.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.199910.287
Mature Green Tomato/Ripe Tomato1.227370.331
Immature Eggplant/Mature Eggplant1.138240.123
Ripe Pepper/Ripe Tomato0.899811
Mature Eggplant/Ripe Tomato0.686791

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.806680.69
1-1-2/M821.260571
12-2/M821.02081
12-4/M820.956230.358
1-3/M823.811730.277
2-1-1/M820.962710.92
2-1/M820.90329
2-6/M821.075731
3-2/M821.125620.967
4-1-1/M821.208411
4-1/M821.382691
4-3-2/M821.585220.253
4-3/M821.238160.268
5-3/M821.309330.572
6-2/M821.785780.235
6-3/M821.37391
7-1/M821.013481
7-2/M821.29622
9-3-2/M821.271251

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.026651
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.390470.362
IL12-4/WTpooled1.227740.557
IL1-4/WTpooled0.968
WT/WTpooled0.998921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.095291

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.960031
DC3000/delta hrp 6h1.026971
DC3000/delta hrp 12h1.108281
DC3000/delta hrp 24h0.981890.934

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.058020.408
DC3000 delta B/DC3000 delta AB1.034350.601

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.89670.328
Exp 36h0.829790.623
Exp 60h0.82610.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002741
Var 0h1.07520.98
Var 12h I row2-row11.038631
Var 12h NI row2-row11.173661
Var 36h I row2-row11.238850.41
Var 36h NI row2-row10.880340.645
Var 60h I row2-row11.008421
Var 60h NI row2-row10.783340.351
Time course 0hI-0hNI0.884390.252
Time course 12hI-12hNI1.016360.892
Time course 36hI-36hNI1.277790.147
Time course 60hI-60hNI1.364690.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.118730.612
transgenic ySAMdc/azygous control (breaker)1.127220.178
transgenic ySAMdc/azygous control (red)1.218820.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.360470.142

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.838540.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.069740.307
Manapal/WT (break)1.025871
Manapal/WT (red)0.894420.183