Expression of 1-1-3.4.2.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13565 | 0.851 |
27DAP/17DAP | 0.8516 | 0.611 |
39DAP/27DAP | 1.81628 | 0.038 |
41DAP/39DAP | 0.53679 | 0.041 |
42DAP/41DAP | 1.08675 | 1 |
43DAP/42DAP | 1.15641 | 1 |
47DAP/43DAP | 0.86563 | 0.562 |
52DAP/47DAP | 0.77904 | 0.476 |
57DAP/52DAP | 1.29504 | 0.95 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22049 | 0.162 |
17DAP/reference | 1.24008 | 0.185 |
27DAP/reference | 1.14428 | 0.135 |
39DAP/reference | 1.27454 | 0.294 |
41DAP/reference | 0.99027 | 0.814 |
42DAP/reference | 1.48922 | 0.001 |
43DAP/reference | 1.35902 | 0.008 |
47DAP/reference | 1.50756 | 0.001 |
52DAP/reference | 0.86057 | 0.115 |
57DAP/reference | 1.12464 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.57918 | 0.036 |
27DAP/17DAP | 1.0278 | 0.957 |
39DAP/27DAP | 0.78963 | 0.094 |
41DAP/39DAP | 1.64099 | 0.799 |
42DAP/41DAP | 0.99869 | 0.784 |
43DAP/42DAP | 0.86112 | 0.181 |
47DAP/43DAP | 0.99536 | 0.985 |
52DAP/47DAP | 0.90634 | 0.389 |
57DAP/52DAP | 0.93061 | 0.466 |
57DAP/7DAP | 0.91584 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.79461 | 0.024 |
17DAP/reference | 2.04846 | 0.007 |
27DAP/reference | 2.20085 | 0.006 |
39DAP/reference | 1.98725 | 0.005 |
41DAP/reference | 1.85429 | 0.008 |
42DAP/reference | 2.30229 | 0.006 |
43DAP/reference | 1.9622 | 0.006 |
47DAP/reference | 1.84634 | 0.014 |
52DAP/reference | 2.6148 | 0.007 |
57DAP/reference | 2.20709 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84368 | 0.257 |
17DAP/reference | 1.3374 | 0.063 |
27DAP/reference | 1.56635 | 0.026 |
39DAP/reference | 1.45882 | 0.056 |
41DAP/reference | 1.51937 | 0.005 |
42DAP/reference | 1.58864 | 0.007 |
43DAP/reference | 0.93474 | 0.344 |
47DAP/reference | 1.49895 | 0.009 |
52DAP/reference | 0.86901 | 0.101 |
57DAP/reference | 0.90591 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50131 | 0.056 |
17DAP/reference | 1.35901 | 0.241 |
27DAP/reference | 1.70038 | 0.036 |
39DAP/reference | 1.88943 | 0.005 |
41DAP/reference | 1.85398 | 0.006 |
42DAP/reference | 2.04821 | 0.006 |
43DAP/reference | 1.98869 | 0.021 |
47DAP/reference | 1.19851 | 0.309 |
52DAP/reference | 1.71108 | 0.053 |
57DAP/reference | 1.45611 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08705 | 0.966 |
26DAP/20DAP | 1.47115 | 0.325 |
34DAP/26DAP | 1.00694 | 1 |
51DAP/34DAP | 0.78005 | 0.147 |
52DAP/51DAP | 0.76015 | 0.151 |
53DAP/52DAP | 0.88708 | 0.288 |
55DAP/53DAP | 0.80984 | 0.072 |
57DAP/55DAP | 1.20549 | 0.324 |
62DAP/57DAP | 0.75774 | 0.28 |
68DAP/62DAP | 0.83675 | 0.7 |
68DAP/14DAP | 1.3757 | 0.265 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.41541 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.19991 | 0.287 |
Mature Green Tomato/Ripe Tomato | 1.22737 | 0.331 |
Immature Eggplant/Mature Eggplant | 1.13824 | 0.123 |
Ripe Pepper/Ripe Tomato | 0.89981 | 1 |
Mature Eggplant/Ripe Tomato | 0.68679 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.80668 | 0.69 |
1-1-2/M82 | 1.26057 | 1 |
12-2/M82 | 1.0208 | 1 |
12-4/M82 | 0.95623 | 0.358 |
1-3/M82 | 3.81173 | 0.277 |
2-1-1/M82 | 0.96271 | 0.92 |
2-1/M82 | 0.90329 | |
2-6/M82 | 1.07573 | 1 |
3-2/M82 | 1.12562 | 0.967 |
4-1-1/M82 | 1.20841 | 1 |
4-1/M82 | 1.38269 | 1 |
4-3-2/M82 | 1.58522 | 0.253 |
4-3/M82 | 1.23816 | 0.268 |
5-3/M82 | 1.30933 | 0.572 |
6-2/M82 | 1.78578 | 0.235 |
6-3/M82 | 1.3739 | 1 |
7-1/M82 | 1.01348 | 1 |
7-2/M82 | 1.29622 | |
9-3-2/M82 | 1.27125 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.02665 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.39047 | 0.362 |
IL12-4/WTpooled | 1.22774 | 0.557 |
IL1-4/WTpooled | 0.968 | |
WT/WTpooled | 0.99892 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09529 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96003 | 1 |
DC3000/delta hrp 6h | 1.02697 | 1 |
DC3000/delta hrp 12h | 1.10828 | 1 |
DC3000/delta hrp 24h | 0.98189 | 0.934 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05802 | 0.408 |
DC3000 delta B/DC3000 delta AB | 1.03435 | 0.601 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8967 | 0.328 |
Exp 36h | 0.82979 | 0.623 |
Exp 60h | 0.8261 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00274 | 1 |
Var 0h | 1.0752 | 0.98 |
Var 12h I row2-row1 | 1.03863 | 1 |
Var 12h NI row2-row1 | 1.17366 | 1 |
Var 36h I row2-row1 | 1.23885 | 0.41 |
Var 36h NI row2-row1 | 0.88034 | 0.645 |
Var 60h I row2-row1 | 1.00842 | 1 |
Var 60h NI row2-row1 | 0.78334 | 0.351 |
Time course 0hI-0hNI | 0.88439 | 0.252 |
Time course 12hI-12hNI | 1.01636 | 0.892 |
Time course 36hI-36hNI | 1.27779 | 0.147 |
Time course 60hI-60hNI | 1.36469 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11873 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 1.12722 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.21882 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.36047 | 0.142 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83854 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06974 | 0.307 |
Manapal/WT (break) | 1.02587 | 1 |
Manapal/WT (red) | 0.89442 | 0.183 |
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