Expression of 1-1-3.4.2.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8439 | 0.324 |
27DAP/17DAP | 0.96108 | 0.957 |
39DAP/27DAP | 1.08845 | 1 |
41DAP/39DAP | 1.3013 | 0.685 |
42DAP/41DAP | 0.97206 | 1 |
43DAP/42DAP | 0.91047 | 0.851 |
47DAP/43DAP | 0.71176 | 0.245 |
52DAP/47DAP | 2.11146 | 0.153 |
57DAP/52DAP | 0.69085 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05577 | 0.384 |
17DAP/reference | 0.94877 | 0.24 |
27DAP/reference | 1.05674 | 0.548 |
39DAP/reference | 1.21918 | 0.018 |
41DAP/reference | 1.05205 | 0.393 |
42DAP/reference | 1.04536 | 0.842 |
43DAP/reference | 0.99135 | 0.805 |
47DAP/reference | 1.04969 | 1 |
52DAP/reference | 1.15353 | 0.108 |
57DAP/reference | 1.31068 | 0.097 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97756 | 0.716 |
27DAP/17DAP | 0.96471 | 0.821 |
39DAP/27DAP | 1.07969 | 0.541 |
41DAP/39DAP | 1.107 | 0.781 |
42DAP/41DAP | 0.86646 | 0.35 |
43DAP/42DAP | 1.06698 | 0.746 |
47DAP/43DAP | 0.94732 | 0.796 |
52DAP/47DAP | 0.98878 | 0.925 |
57DAP/52DAP | 0.97218 | 0.732 |
57DAP/7DAP | 0.85417 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80537 | 0.168 |
17DAP/reference | 0.91907 | 0.124 |
27DAP/reference | 1.30501 | 0.026 |
39DAP/reference | 0.73697 | 0.015 |
41DAP/reference | 0.93719 | 0.341 |
42DAP/reference | 1.04911 | 0.686 |
43DAP/reference | 0.75448 | 0.025 |
47DAP/reference | 0.80667 | 0.066 |
52DAP/reference | 0.93567 | 0.15 |
57DAP/reference | 0.72262 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25282 | 0.246 |
17DAP/reference | 1.4719 | 0.009 |
27DAP/reference | 1.46536 | 0.029 |
39DAP/reference | 1.53399 | 0.015 |
41DAP/reference | 1.47774 | 0.01 |
42DAP/reference | 1.46247 | 0.031 |
43DAP/reference | 2.43084 | 0.011 |
47DAP/reference | 1.35012 | 0.036 |
52DAP/reference | 1.59444 | 0.006 |
57DAP/reference | 1.38051 | 0.015 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87934 | 0.183 |
17DAP/reference | 1.09125 | 0.699 |
27DAP/reference | 0.84931 | 0.113 |
39DAP/reference | 0.92629 | 0.246 |
41DAP/reference | 1.23049 | 0.439 |
42DAP/reference | 1.3186 | 0.019 |
43DAP/reference | 1.03383 | 0.59 |
47DAP/reference | 1.17512 | 0.018 |
52DAP/reference | 1.04374 | 0.657 |
57DAP/reference | 1.69462 | 0.028 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12583 | 0.966 |
26DAP/20DAP | 1.05457 | 1 |
34DAP/26DAP | 1.16669 | 1 |
51DAP/34DAP | 0.88949 | 0.442 |
52DAP/51DAP | 1.01004 | 1 |
53DAP/52DAP | 1.09999 | 0.797 |
55DAP/53DAP | 1.21143 | 0.162 |
57DAP/55DAP | 0.82203 | 0.403 |
62DAP/57DAP | 1.17981 | 0.303 |
68DAP/62DAP | 0.97995 | 0.769 |
68DAP/14DAP | 0.99791 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.66687 | 0.061 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.89179 | 0.347 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.64896 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.72555 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10048 | 1 |
1-1-2/M82 | 1.02254 | |
12-2/M82 | 1.29208 | 1 |
12-4/M82 | 1.0775 | 1 |
1-3/M82 | 0.86416 | 0.501 |
2-1-1/M82 | 1.0154 | 0.375 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.91735 | 1 |
3-2/M82 | 0.82554 | |
4-1-1/M82 | 1.07485 | 0.613 |
4-1/M82 | 1.30285 | |
4-3-2/M82 | 0.96455 | 1 |
4-3/M82 | 0.72639 | |
5-3/M82 | 0.99676 | 1 |
6-2/M82 | 0.91347 | 0.481 |
6-3/M82 | 0.95119 | 0.236 |
7-1/M82 | 0.87817 | |
7-2/M82 | 0.85955 | 0.54 |
9-3-2/M82 | 0.95447 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.71145 | 0.358 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.96764 | 1 |
IL12-4/WTpooled | 0.92007 | 1 |
IL1-4/WTpooled | 0.76163 | |
WT/WTpooled | 0.92885 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98587 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00924 | 0.921 |
DC3000/delta hrp 6h | 0.90984 | 0.95 |
DC3000/delta hrp 12h | 1.31833 | 1 |
DC3000/delta hrp 24h | 0.96711 | 0.725 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.0601 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.4186 | 1 |
Exp 60h | 1.69128 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9651 | 1 |
Var 0h | 0.80461 | 1 |
Var 12h I row2-row1 | 1.04776 | 0.544 |
Var 12h NI row2-row1 | 0.89625 | 0.713 |
Var 36h I row2-row1 | 0.94571 | 0.805 |
Var 36h NI row2-row1 | 0.70581 | 0.645 |
Var 60h I row2-row1 | 1.20386 | 0.543 |
Var 60h NI row2-row1 | 0.92867 | 0.977 |
Time course 0hI-0hNI | 0.90102 | 0.207 |
Time course 12hI-12hNI | 1.05923 | 0.482 |
Time course 36hI-36hNI | 1.22724 | 0.011 |
Time course 60hI-60hNI | 1.4534 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87792 | 0.278 |
transgenic ySAMdc/azygous control (breaker) | 1.61725 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.14297 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05985 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85457 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88275 | 1 |
Manapal/WT (break) | 1.16926 | 0.381 |
Manapal/WT (red) | 1.02799 | 1 |
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