Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.4.2.19

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.12615	0.947
27DAP/17DAP	1.54723	0.732
39DAP/27DAP	0.91402	0.641
41DAP/39DAP	0.92813	0.694
42DAP/41DAP	1.40755	0.311
43DAP/42DAP	1.13513	0.937
47DAP/43DAP	1.0222	0.999
52DAP/47DAP	1.27116	0.605
57DAP/52DAP	1.05557	0.988

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.39254	0.049
17DAP/reference	1.23013	0.028
27DAP/reference	1.14759	0.065
39DAP/reference	1.11877	0.413
41DAP/reference	1.27258	0.365
42DAP/reference	1.22652	0.287
43DAP/reference	1.14008	0.044
47DAP/reference	1.47059	0.003
52DAP/reference	1.03842	0.766
57DAP/reference	1.04827	0.767

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.03178	0.881
27DAP/17DAP	1.08889	0.967
39DAP/27DAP	1.38208	0.447
41DAP/39DAP	1.43377	0.65
42DAP/41DAP	0.97474	0.721
43DAP/42DAP	1.43954	0.513
47DAP/43DAP	1.07736	0.926
52DAP/47DAP	1.39156	0.689
57DAP/52DAP	0.84371	0.519
57DAP/7DAP	0.61433	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.97498	0.613
17DAP/reference	0.91968	0.389
27DAP/reference	0.90202	0.402
39DAP/reference	1.07312	0.745
41DAP/reference	1.09512	0.812
42DAP/reference	0.86159	0.2
43DAP/reference	1.0264	0.764
47DAP/reference	1.01408	1
52DAP/reference	0.87775	0.232
57DAP/reference	1.30434	0.198

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.22932	0.545
17DAP/reference	0.47876
27DAP/reference	1.15503	0.463
39DAP/reference	1.12677	0.912
41DAP/reference	1.26062	0.234
42DAP/reference	1.00818	1
43DAP/reference	1.34152	0.065
47DAP/reference	1.16352	0.039
52DAP/reference	N/A	N/A
57DAP/reference	0.58581

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.06787	1
17DAP/reference	1.66104	0.137
27DAP/reference	2.4079
39DAP/reference	1.10154
41DAP/reference	0.77876
42DAP/reference	0.6137	0.025
43DAP/reference	0.74242	0.165
47DAP/reference	1.21935	0.294
52DAP/reference	0.82458	0.36
57DAP/reference	0.74457	0.017

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.40087	0.015
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.24671	1
51DAP/34DAP	0.87045
52DAP/51DAP	1.12986	1
53DAP/52DAP	1.14883	0.882
55DAP/53DAP	1.39587	0.948
57DAP/55DAP	N/A	N/A
62DAP/57DAP	1.35082
68DAP/62DAP	0.05038
68DAP/14DAP	0.80037

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	3.05388

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.96888	0.321
IL2-6/WTpooled	1.23514	0.395
IL7-5/WTpooled	0.87018	1
IL7-3/WTpooled	1.00345	1
IL12-4/WTpooled	0.97924	1
IL1-4/WTpooled	1.05343	1
WT/WTpooled	0.94639	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.95236	0.343

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A