Expression of 1-1-3.4.20.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.075670.947
27DAP/17DAP1.293180.845
39DAP/27DAP1.094370.782
41DAP/39DAP1.279650.715
42DAP/41DAP1.114691
43DAP/42DAP0.966680.909
47DAP/43DAP1.189950.793
52DAP/47DAP1.544180.654
57DAP/52DAP1.139760.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.934360.269
17DAP/reference0.598850.029
27DAP/reference1.114060.904
39DAP/reference0.841590.267
41DAP/reference0.548240.049
42DAP/reference1.685470.019
43DAP/reference1.656070.007
47DAP/reference2.082180.004
52DAP/reference2.865010.019
57DAP/reference3.491280.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.929140.578
27DAP/17DAP1.176980.465
39DAP/27DAP1.169210.615
41DAP/39DAP1.154920.674
42DAP/41DAP0.868770.399
43DAP/42DAP1.344610.23
47DAP/43DAP0.848160.357
52DAP/47DAP1.127630.819
57DAP/52DAP1.046161
57DAP/7DAP1.023491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.997090.758
17DAP/reference0.898850.167
27DAP/reference0.813180.026
39DAP/reference0.773860.049
41DAP/reference0.849010.086
42DAP/reference0.813850.106
43DAP/reference0.885970.166
47DAP/reference0.896950.383
52DAP/reference0.887760.213
57DAP/reference0.825960.021

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.762690.204
17DAP/reference0.687620.08
27DAP/reference0.845240.393
39DAP/reference1.170950.366
41DAP/reference1.309960.149
42DAP/reference1.750640.013
43DAP/reference0.857210.314
47DAP/reference1.612770.008
52DAP/reference1.068420.092
57DAP/reference1.067910.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.841870.147
17DAP/reference0.847910.328
27DAP/reference0.930660.23
39DAP/reference0.919940.101
41DAP/reference0.904840.237
42DAP/reference0.910390.361
43DAP/reference1.074791
47DAP/reference1.04550.847
52DAP/reference1.124680.904
57DAP/reference3.004120.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.968781
26DAP/20DAP0.931151
34DAP/26DAP1.104731
51DAP/34DAP1.095230.746
52DAP/51DAP0.923961
53DAP/52DAP0.833750.202
55DAP/53DAP1.14780.964
57DAP/55DAP0.780930.178
62DAP/57DAP1.332190.515
68DAP/62DAP9.878630.017
68DAP/14DAP17.54220.016

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.751920.079

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato3.58262
Immature Eggplant/Mature Eggplant5.58957
Ripe Pepper/Ripe Tomato2.138310.244
Mature Eggplant/Ripe Tomato1.546210.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.13641
1-1-2/M821.008351
12-2/M820.906440.862
12-4/M820.84347
1-3/M821.18531
2-1-1/M820.901590.784
2-1/M821.21522
2-6/M820.98931
3-2/M820.93891
4-1-1/M821.110470.547
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.405361
5-3/M821.08071
6-2/M82N/AN/A
6-3/M820.971071
7-1/M821.16961
7-2/M821.110971
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.905241
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.67996
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.854121
IL1-4/WTpooled1.379321
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.77341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.106260.629
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.075861
DC3000/delta hrp 24h0.93590.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB3.69803
DC3000 delta B/DC3000 delta AB0.31948

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.921521
Exp 36hN/AN/A
Exp 60h0.789790.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.148481
Var 0hN/AN/A
Var 12h I row2-row10.831340.627
Var 12h NI row2-row13.056620.649
Var 36h I row2-row11.004531
Var 36h NI row2-row10.730181
Var 60h I row2-row11.05699
Var 60h NI row2-row10.609471
Time course 0hI-0hNI0.784110.415
Time course 12hI-12hNI1.257810.892
Time course 36hI-36hNI1.429380.28
Time course 60hI-60hNI0.987511

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.04210.331
transgenic ySAMdc/azygous control (breaker)0.932510.251
transgenic ySAMdc/azygous control (red)1.030970.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.994370.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.007761

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.087750.307
Manapal/WT (break)1.216640.381
Manapal/WT (red)0.907030.503