Expression of 1-1-3.4.20.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07567 | 0.947 |
27DAP/17DAP | 1.29318 | 0.845 |
39DAP/27DAP | 1.09437 | 0.782 |
41DAP/39DAP | 1.27965 | 0.715 |
42DAP/41DAP | 1.11469 | 1 |
43DAP/42DAP | 0.96668 | 0.909 |
47DAP/43DAP | 1.18995 | 0.793 |
52DAP/47DAP | 1.54418 | 0.654 |
57DAP/52DAP | 1.13976 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93436 | 0.269 |
17DAP/reference | 0.59885 | 0.029 |
27DAP/reference | 1.11406 | 0.904 |
39DAP/reference | 0.84159 | 0.267 |
41DAP/reference | 0.54824 | 0.049 |
42DAP/reference | 1.68547 | 0.019 |
43DAP/reference | 1.65607 | 0.007 |
47DAP/reference | 2.08218 | 0.004 |
52DAP/reference | 2.86501 | 0.019 |
57DAP/reference | 3.49128 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92914 | 0.578 |
27DAP/17DAP | 1.17698 | 0.465 |
39DAP/27DAP | 1.16921 | 0.615 |
41DAP/39DAP | 1.15492 | 0.674 |
42DAP/41DAP | 0.86877 | 0.399 |
43DAP/42DAP | 1.34461 | 0.23 |
47DAP/43DAP | 0.84816 | 0.357 |
52DAP/47DAP | 1.12763 | 0.819 |
57DAP/52DAP | 1.04616 | 1 |
57DAP/7DAP | 1.02349 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99709 | 0.758 |
17DAP/reference | 0.89885 | 0.167 |
27DAP/reference | 0.81318 | 0.026 |
39DAP/reference | 0.77386 | 0.049 |
41DAP/reference | 0.84901 | 0.086 |
42DAP/reference | 0.81385 | 0.106 |
43DAP/reference | 0.88597 | 0.166 |
47DAP/reference | 0.89695 | 0.383 |
52DAP/reference | 0.88776 | 0.213 |
57DAP/reference | 0.82596 | 0.021 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76269 | 0.204 |
17DAP/reference | 0.68762 | 0.08 |
27DAP/reference | 0.84524 | 0.393 |
39DAP/reference | 1.17095 | 0.366 |
41DAP/reference | 1.30996 | 0.149 |
42DAP/reference | 1.75064 | 0.013 |
43DAP/reference | 0.85721 | 0.314 |
47DAP/reference | 1.61277 | 0.008 |
52DAP/reference | 1.06842 | 0.092 |
57DAP/reference | 1.06791 | 0.834 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84187 | 0.147 |
17DAP/reference | 0.84791 | 0.328 |
27DAP/reference | 0.93066 | 0.23 |
39DAP/reference | 0.91994 | 0.101 |
41DAP/reference | 0.90484 | 0.237 |
42DAP/reference | 0.91039 | 0.361 |
43DAP/reference | 1.07479 | 1 |
47DAP/reference | 1.0455 | 0.847 |
52DAP/reference | 1.12468 | 0.904 |
57DAP/reference | 3.00412 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96878 | 1 |
26DAP/20DAP | 0.93115 | 1 |
34DAP/26DAP | 1.10473 | 1 |
51DAP/34DAP | 1.09523 | 0.746 |
52DAP/51DAP | 0.92396 | 1 |
53DAP/52DAP | 0.83375 | 0.202 |
55DAP/53DAP | 1.1478 | 0.964 |
57DAP/55DAP | 0.78093 | 0.178 |
62DAP/57DAP | 1.33219 | 0.515 |
68DAP/62DAP | 9.87863 | 0.017 |
68DAP/14DAP | 17.5422 | 0.016 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.75192 | 0.079 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 3.58262 | |
Immature Eggplant/Mature Eggplant | 5.58957 | |
Ripe Pepper/Ripe Tomato | 2.13831 | 0.244 |
Mature Eggplant/Ripe Tomato | 1.54621 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.13641 | |
1-1-2/M82 | 1.00835 | 1 |
12-2/M82 | 0.90644 | 0.862 |
12-4/M82 | 0.84347 | |
1-3/M82 | 1.18531 | |
2-1-1/M82 | 0.90159 | 0.784 |
2-1/M82 | 1.21522 | |
2-6/M82 | 0.9893 | 1 |
3-2/M82 | 0.93891 | |
4-1-1/M82 | 1.11047 | 0.547 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.40536 | 1 |
5-3/M82 | 1.0807 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.97107 | 1 |
7-1/M82 | 1.16961 | |
7-2/M82 | 1.11097 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90524 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.67996 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.85412 | 1 |
IL1-4/WTpooled | 1.37932 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.77341 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10626 | 0.629 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.07586 | 1 |
DC3000/delta hrp 24h | 0.9359 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 3.69803 | |
DC3000 delta B/DC3000 delta AB | 0.31948 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92152 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.78979 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.14848 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.83134 | 0.627 |
Var 12h NI row2-row1 | 3.05662 | 0.649 |
Var 36h I row2-row1 | 1.00453 | 1 |
Var 36h NI row2-row1 | 0.73018 | 1 |
Var 60h I row2-row1 | 1.05699 | |
Var 60h NI row2-row1 | 0.60947 | 1 |
Time course 0hI-0hNI | 0.78411 | 0.415 |
Time course 12hI-12hNI | 1.25781 | 0.892 |
Time course 36hI-36hNI | 1.42938 | 0.28 |
Time course 60hI-60hNI | 0.98751 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0421 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 0.93251 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.03097 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99437 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00776 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08775 | 0.307 |
Manapal/WT (break) | 1.21664 | 0.381 |
Manapal/WT (red) | 0.90703 | 0.503 |
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