Expression of 1-1-3.4.20.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86886 | 0.445 |
27DAP/17DAP | 0.98332 | 0.994 |
39DAP/27DAP | 1.29069 | 0.4 |
41DAP/39DAP | 1.07295 | 0.78 |
42DAP/41DAP | 1.66821 | 0.587 |
43DAP/42DAP | 1.23042 | 0.607 |
47DAP/43DAP | 1.26381 | 0.689 |
52DAP/47DAP | 1.16638 | 0.948 |
57DAP/52DAP | 0.92233 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8996 | 0.041 |
17DAP/reference | 0.94933 | 0.342 |
27DAP/reference | 0.95829 | 0.249 |
39DAP/reference | 0.91175 | 0.093 |
41DAP/reference | 0.91332 | 0.201 |
42DAP/reference | 0.79445 | 0.001 |
43DAP/reference | 0.92773 | 0.113 |
47DAP/reference | 0.85923 | 0.011 |
52DAP/reference | 1.26591 | 0.134 |
57DAP/reference | 1.03597 | 0.419 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14708 | 0.298 |
27DAP/17DAP | 1.08819 | 0.915 |
39DAP/27DAP | 1.10936 | 0.603 |
41DAP/39DAP | 0.83351 | 0.361 |
42DAP/41DAP | 1.03282 | 1 |
43DAP/42DAP | 1.16416 | 0.25 |
47DAP/43DAP | 0.95339 | 0.796 |
52DAP/47DAP | 1.15123 | 0.568 |
57DAP/52DAP | 1.04118 | 0.776 |
57DAP/7DAP | 1.11994 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14768 | 0.351 |
17DAP/reference | 0.88604 | 0.094 |
27DAP/reference | 1.05252 | 0.974 |
39DAP/reference | 1.19049 | 0.066 |
41DAP/reference | 0.74975 | 0.023 |
42DAP/reference | 0.8788 | 0.178 |
43DAP/reference | 0.95288 | 0.252 |
47DAP/reference | 0.98263 | 0.671 |
52DAP/reference | 0.75019 | 0.04 |
57DAP/reference | 0.98357 | 0.513 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00415 | 0.993 |
17DAP/reference | 0.81496 | 0.02 |
27DAP/reference | 0.91128 | 0.15 |
39DAP/reference | 0.89465 | 0.129 |
41DAP/reference | 0.95967 | 0.315 |
42DAP/reference | 0.83864 | 0.023 |
43DAP/reference | 0.8863 | 0.111 |
47DAP/reference | 0.82865 | 0.015 |
52DAP/reference | 0.90674 | 0.06 |
57DAP/reference | 0.79397 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77543 | 0.057 |
17DAP/reference | 0.94211 | 0.407 |
27DAP/reference | 0.96042 | 0.357 |
39DAP/reference | 0.94715 | 0.328 |
41DAP/reference | 0.82987 | 0.148 |
42DAP/reference | 1.09068 | 0.635 |
43DAP/reference | 0.88982 | 0.064 |
47DAP/reference | 0.92905 | 0.161 |
52DAP/reference | 1.21439 | 0.448 |
57DAP/reference | 1.121 | 0.071 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9523 | 0.997 |
26DAP/20DAP | 0.76865 | 0.228 |
34DAP/26DAP | 0.84281 | 0.419 |
51DAP/34DAP | 1.13824 | 0.445 |
52DAP/51DAP | 0.87408 | 1 |
53DAP/52DAP | 1.02161 | 0.921 |
55DAP/53DAP | 0.85295 | 0.303 |
57DAP/55DAP | 1.06398 | 0.947 |
62DAP/57DAP | 0.90927 | 0.681 |
68DAP/62DAP | 1.34191 | 0.345 |
68DAP/14DAP | 1.2003 | 0.436 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79391 | 0.097 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.1222 | 0.287 |
Mature Green Tomato/Ripe Tomato | 0.47561 | 0.023 |
Immature Eggplant/Mature Eggplant | 0.80549 | 0.223 |
Ripe Pepper/Ripe Tomato | 0.95982 | 1 |
Mature Eggplant/Ripe Tomato | 0.54095 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.34765 | 0.591 |
1-1-2/M82 | 1.20946 | 1 |
12-2/M82 | 0.90059 | 0.955 |
12-4/M82 | 0.72658 | 0.33 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.10641 | 0.422 |
2-1/M82 | 1.21569 | 0.345 |
2-6/M82 | 1.06051 | |
3-2/M82 | 0.96979 | 1 |
4-1-1/M82 | 0.90661 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.31107 | 1 |
5-3/M82 | 1.16046 | 0.378 |
6-2/M82 | 0.86644 | |
6-3/M82 | 0.56033 | 1 |
7-1/M82 | 1.06224 | 0.598 |
7-2/M82 | 0.90866 | 0.881 |
9-3-2/M82 | 0.93305 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.2554 | 0.456 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8839 | 1 |
IL12-4/WTpooled | 1.02094 | 0.891 |
IL1-4/WTpooled | 0.92887 | |
WT/WTpooled | 0.98244 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05016 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87676 | 1 |
DC3000/delta hrp 6h | 0.91303 | 0.95 |
DC3000/delta hrp 12h | 0.8892 | 1 |
DC3000/delta hrp 24h | 0.81367 | 0.087 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.51865 | |
DC3000 delta B/DC3000 delta AB | 3.74153 | 0.13 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02347 | 1 |
Exp 36h | 0.90585 | 0.749 |
Exp 60h | 0.95195 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00346 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.97736 | 0.948 |
Var 12h NI row2-row1 | 1.1176 | 1 |
Var 36h I row2-row1 | 1.23302 | 0.489 |
Var 36h NI row2-row1 | 0.96494 | 0.791 |
Var 60h I row2-row1 | 0.85342 | 0.439 |
Var 60h NI row2-row1 | 1.07386 | 0.904 |
Time course 0hI-0hNI | 1.13881 | 0.574 |
Time course 12hI-12hNI | 0.90131 | 0.144 |
Time course 36hI-36hNI | 0.87853 | 0.112 |
Time course 60hI-60hNI | 0.64182 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03501 | 0.384 |
transgenic ySAMdc/azygous control (breaker) | 1.52421 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.04004 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14911 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88483 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.4569 | 0.093 |
Manapal/WT (break) | 0.79315 | 1 |
Manapal/WT (red) | 0.7723 | 0.184 |
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