Expression of 1-1-3.4.20.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.868860.445
27DAP/17DAP0.983320.994
39DAP/27DAP1.290690.4
41DAP/39DAP1.072950.78
42DAP/41DAP1.668210.587
43DAP/42DAP1.230420.607
47DAP/43DAP1.263810.689
52DAP/47DAP1.166380.948
57DAP/52DAP0.922330.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.89960.041
17DAP/reference0.949330.342
27DAP/reference0.958290.249
39DAP/reference0.911750.093
41DAP/reference0.913320.201
42DAP/reference0.794450.001
43DAP/reference0.927730.113
47DAP/reference0.859230.011
52DAP/reference1.265910.134
57DAP/reference1.035970.419

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.147080.298
27DAP/17DAP1.088190.915
39DAP/27DAP1.109360.603
41DAP/39DAP0.833510.361
42DAP/41DAP1.032821
43DAP/42DAP1.164160.25
47DAP/43DAP0.953390.796
52DAP/47DAP1.151230.568
57DAP/52DAP1.041180.776
57DAP/7DAP1.119941

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.147680.351
17DAP/reference0.886040.094
27DAP/reference1.052520.974
39DAP/reference1.190490.066
41DAP/reference0.749750.023
42DAP/reference0.87880.178
43DAP/reference0.952880.252
47DAP/reference0.982630.671
52DAP/reference0.750190.04
57DAP/reference0.983570.513

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004150.993
17DAP/reference0.814960.02
27DAP/reference0.911280.15
39DAP/reference0.894650.129
41DAP/reference0.959670.315
42DAP/reference0.838640.023
43DAP/reference0.88630.111
47DAP/reference0.828650.015
52DAP/reference0.906740.06
57DAP/reference0.793970.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.775430.057
17DAP/reference0.942110.407
27DAP/reference0.960420.357
39DAP/reference0.947150.328
41DAP/reference0.829870.148
42DAP/reference1.090680.635
43DAP/reference0.889820.064
47DAP/reference0.929050.161
52DAP/reference1.214390.448
57DAP/reference1.1210.071

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.95230.997
26DAP/20DAP0.768650.228
34DAP/26DAP0.842810.419
51DAP/34DAP1.138240.445
52DAP/51DAP0.874081
53DAP/52DAP1.021610.921
55DAP/53DAP0.852950.303
57DAP/55DAP1.063980.947
62DAP/57DAP0.909270.681
68DAP/62DAP1.341910.345
68DAP/14DAP1.20030.436

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.793910.097

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.12220.287
Mature Green Tomato/Ripe Tomato0.475610.023
Immature Eggplant/Mature Eggplant0.805490.223
Ripe Pepper/Ripe Tomato0.959821
Mature Eggplant/Ripe Tomato0.540951

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.347650.591
1-1-2/M821.209461
12-2/M820.900590.955
12-4/M820.726580.33
1-3/M82N/AN/A
2-1-1/M821.106410.422
2-1/M821.215690.345
2-6/M821.06051
3-2/M820.969791
4-1-1/M820.906611
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.311071
5-3/M821.160460.378
6-2/M820.86644
6-3/M820.560331
7-1/M821.062240.598
7-2/M820.908660.881
9-3-2/M820.93305

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.25540.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.88391
IL12-4/WTpooled1.020940.891
IL1-4/WTpooled0.92887
WT/WTpooled0.982441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.050161

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.876761
DC3000/delta hrp 6h0.913030.95
DC3000/delta hrp 12h0.88921
DC3000/delta hrp 24h0.813670.087

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.51865
DC3000 delta B/DC3000 delta AB3.741530.13

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.023471
Exp 36h0.905850.749
Exp 60h0.951950.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.003461
Var 0hN/AN/A
Var 12h I row2-row10.977360.948
Var 12h NI row2-row11.11761
Var 36h I row2-row11.233020.489
Var 36h NI row2-row10.964940.791
Var 60h I row2-row10.853420.439
Var 60h NI row2-row11.073860.904
Time course 0hI-0hNI1.138810.574
Time course 12hI-12hNI0.901310.144
Time course 36hI-36hNI0.878530.112
Time course 60hI-60hNI0.641820.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.035010.384
transgenic ySAMdc/azygous control (breaker)1.524210.162
transgenic ySAMdc/azygous control (red)1.040040.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.149110.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.884830.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.45690.093
Manapal/WT (break)0.793151
Manapal/WT (red)0.77230.184