Expression of 1-1-3.4.3.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031010.867
27DAP/17DAP1.165470.868
39DAP/27DAP1.105751
41DAP/39DAP0.675760.207
42DAP/41DAP2.129410.773
43DAP/42DAP1.169760.937
47DAP/43DAP0.560640.074
52DAP/47DAP1.148790.956
57DAP/52DAP0.860030.86

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.585870.028
17DAP/reference1.144710.653
27DAP/reference0.927580.457
39DAP/referenceN/AN/A
41DAP/reference1.16478
42DAP/reference0.731330.067
43DAP/reference0.81505
47DAP/reference1.013980.72
52DAP/reference0.996280.749
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.97440.763
27DAP/17DAP0.69742
39DAP/27DAP1.513540.107
41DAP/39DAP0.8776
42DAP/41DAP1.741960.084
43DAP/42DAPN/AN/A
47DAP/43DAP1.020490.941
52DAP/47DAP1.049490.947
57DAP/52DAPN/AN/A
57DAP/7DAP2.56022

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.903460.168
17DAP/reference1.178150.399
27DAP/reference1.20710.131
39DAP/reference0.988260.64
41DAP/reference1.349590.043
42DAP/reference1.133580.534
43DAP/reference1.12090.066
47DAP/reference0.886920.504
52DAP/reference1.019931
57DAP/reference1.142610.356

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.16155
17DAP/reference0.71908
27DAP/reference0.923190.393
39DAP/reference1.173390.233
41DAP/reference1.040930.91
42DAP/reference1.693990.359
43DAP/reference1.173970.553
47DAP/reference1.076240.143
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.981190.489
17DAP/reference1.044460.824
27DAP/reference1.164640.248
39DAP/reference0.805940.111
41DAP/reference1.242710.089
42DAP/reference1.069730.51
43DAP/reference1.123610.625
47DAP/reference1.04407
52DAP/reference0.809190.167
57DAP/reference1.047320.909

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.35902
26DAP/20DAPN/AN/A
34DAP/26DAP0.457340.052
51DAP/34DAP0.45840.225
52DAP/51DAP1.472840.213
53DAP/52DAP0.51995
55DAP/53DAP1.71691
57DAP/55DAP0.74497
62DAP/57DAP0.7463
68DAP/62DAPN/AN/A
68DAP/14DAP2.24238

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.176690.277
IL2-6/WTpooled1.083981
IL7-5/WTpooled1.013831
IL7-3/WTpooled1.202871
IL12-4/WTpooled1.062550.891
IL1-4/WTpooled1.029980.322
WT/WTpooled1.039081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A