Expression of 1-1-3.4.3.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03101 | 0.867 |
27DAP/17DAP | 1.16547 | 0.868 |
39DAP/27DAP | 1.10575 | 1 |
41DAP/39DAP | 0.67576 | 0.207 |
42DAP/41DAP | 2.12941 | 0.773 |
43DAP/42DAP | 1.16976 | 0.937 |
47DAP/43DAP | 0.56064 | 0.074 |
52DAP/47DAP | 1.14879 | 0.956 |
57DAP/52DAP | 0.86003 | 0.86 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.58587 | 0.028 |
17DAP/reference | 1.14471 | 0.653 |
27DAP/reference | 0.92758 | 0.457 |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.16478 | |
42DAP/reference | 0.73133 | 0.067 |
43DAP/reference | 0.81505 | |
47DAP/reference | 1.01398 | 0.72 |
52DAP/reference | 0.99628 | 0.749 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9744 | 0.763 |
27DAP/17DAP | 0.69742 | |
39DAP/27DAP | 1.51354 | 0.107 |
41DAP/39DAP | 0.8776 | |
42DAP/41DAP | 1.74196 | 0.084 |
43DAP/42DAP | N/A | N/A |
47DAP/43DAP | 1.02049 | 0.941 |
52DAP/47DAP | 1.04949 | 0.947 |
57DAP/52DAP | N/A | N/A |
57DAP/7DAP | 2.56022 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90346 | 0.168 |
17DAP/reference | 1.17815 | 0.399 |
27DAP/reference | 1.2071 | 0.131 |
39DAP/reference | 0.98826 | 0.64 |
41DAP/reference | 1.34959 | 0.043 |
42DAP/reference | 1.13358 | 0.534 |
43DAP/reference | 1.1209 | 0.066 |
47DAP/reference | 0.88692 | 0.504 |
52DAP/reference | 1.01993 | 1 |
57DAP/reference | 1.14261 | 0.356 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.16155 | |
17DAP/reference | 0.71908 | |
27DAP/reference | 0.92319 | 0.393 |
39DAP/reference | 1.17339 | 0.233 |
41DAP/reference | 1.04093 | 0.91 |
42DAP/reference | 1.69399 | 0.359 |
43DAP/reference | 1.17397 | 0.553 |
47DAP/reference | 1.07624 | 0.143 |
52DAP/reference | N/A | N/A |
57DAP/reference | N/A | N/A |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98119 | 0.489 |
17DAP/reference | 1.04446 | 0.824 |
27DAP/reference | 1.16464 | 0.248 |
39DAP/reference | 0.80594 | 0.111 |
41DAP/reference | 1.24271 | 0.089 |
42DAP/reference | 1.06973 | 0.51 |
43DAP/reference | 1.12361 | 0.625 |
47DAP/reference | 1.04407 | |
52DAP/reference | 0.80919 | 0.167 |
57DAP/reference | 1.04732 | 0.909 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.35902 | |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.45734 | 0.052 |
51DAP/34DAP | 0.4584 | 0.225 |
52DAP/51DAP | 1.47284 | 0.213 |
53DAP/52DAP | 0.51995 | |
55DAP/53DAP | 1.71691 | |
57DAP/55DAP | 0.74497 | |
62DAP/57DAP | 0.7463 | |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 2.24238 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.17669 | 0.277 |
IL2-6/WTpooled | 1.08398 | 1 |
IL7-5/WTpooled | 1.01383 | 1 |
IL7-3/WTpooled | 1.20287 | 1 |
IL12-4/WTpooled | 1.06255 | 0.891 |
IL1-4/WTpooled | 1.02998 | 0.322 |
WT/WTpooled | 1.03908 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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