Expression of 1-1-3.4.4.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.875780.551
27DAP/17DAP1.354170.793
39DAP/27DAP1.414410.341
41DAP/39DAP0.74360.205
42DAP/41DAP0.965691
43DAP/42DAP0.898530.729
47DAP/43DAP1.124170.538
52DAP/47DAP0.83860.637
57DAP/52DAP1.022981

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.858560.071
17DAP/reference0.840010.169
27DAP/reference1.253130.258
39DAP/reference1.180040.57
41DAP/reference0.662850.085
42DAP/reference0.81510.021
43DAP/reference0.55699
47DAP/reference1.080320.284
52DAP/reference0.940310.438
57DAP/reference0.60653

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP5.486430.389
27DAP/17DAP1.643010.377
39DAP/27DAP1.394510.623
41DAP/39DAP1.050560.868
42DAP/41DAP1.045390.907
43DAP/42DAP1.02641
47DAP/43DAP1.064670.902
52DAP/47DAP0.964130.893
57DAP/52DAP1.140710.523
57DAP/7DAP1.291020.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.082220.472
17DAP/reference0.962920.338
27DAP/reference1.114830.371
39DAP/reference1.160810.149
41DAP/reference1.210450.075
42DAP/reference1.115080.686
43DAP/reference1.216380.124
47DAP/reference0.856370.168
52DAP/reference1.232170.071
57DAP/reference0.992080.61

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.122380.315
17DAP/reference0.941280.487
27DAP/reference1.097020.271
39DAP/reference1.257180.355
41DAP/reference0.898590.024
42DAP/reference0.856110.046
43DAP/reference0.881020.307
47DAP/reference0.905030.12
52DAP/reference1.16370.471
57DAP/reference0.914170.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910060.249
17DAP/reference0.975810.658
27DAP/reference1.149120.408
39DAP/reference1.058970.528
41DAP/reference1.05590.818
42DAP/reference1.105010.529
43DAP/reference1.053850.88
47DAP/reference0.972470.509
52DAP/reference0.969650.675
57DAP/reference0.992950.672

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.110251
26DAP/20DAP2.243530.137
34DAP/26DAPN/AN/A
51DAP/34DAP0.424720.088
52DAP/51DAP0.43125
53DAP/52DAP1.072230.862
55DAP/53DAP1.240090.861
57DAP/55DAP2.61255
62DAP/57DAP1.009621
68DAP/62DAP0.878530.747
68DAP/14DAP1.423160.211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.664860.151

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.218520.523
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.303320.293
Mature Eggplant/Ripe Tomato0.914761

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.31101
12-2/M821.006831
12-4/M820.820651
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.38814
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.15638
4-3/M82N/AN/A
5-3/M820.908850.364
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.789910.243
IL2-6/WTpooled1.153920.456
IL7-5/WTpooled1.155460.622
IL7-3/WTpooled1.134220.362
IL12-4/WTpooled1.08320.737
IL1-4/WTpooled1.020511
WT/WTpooled1.024711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.064240.894
DC3000/delta hrp 6h1.104481
DC3000/delta hrp 12h1.034111
DC3000/delta hrp 24h0.777260.072

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.98730.614
transgenic ySAMdc/azygous control (breaker)1.178630.178
transgenic ySAMdc/azygous control (red)0.971721

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.942520.12

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.267241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.086260.307
Manapal/WT (break)1.528430.14
Manapal/WT (red)1.118710.164