Expression of 1-1-3.4.4.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87578 | 0.551 |
27DAP/17DAP | 1.35417 | 0.793 |
39DAP/27DAP | 1.41441 | 0.341 |
41DAP/39DAP | 0.7436 | 0.205 |
42DAP/41DAP | 0.96569 | 1 |
43DAP/42DAP | 0.89853 | 0.729 |
47DAP/43DAP | 1.12417 | 0.538 |
52DAP/47DAP | 0.8386 | 0.637 |
57DAP/52DAP | 1.02298 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85856 | 0.071 |
17DAP/reference | 0.84001 | 0.169 |
27DAP/reference | 1.25313 | 0.258 |
39DAP/reference | 1.18004 | 0.57 |
41DAP/reference | 0.66285 | 0.085 |
42DAP/reference | 0.8151 | 0.021 |
43DAP/reference | 0.55699 | |
47DAP/reference | 1.08032 | 0.284 |
52DAP/reference | 0.94031 | 0.438 |
57DAP/reference | 0.60653 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 5.48643 | 0.389 |
27DAP/17DAP | 1.64301 | 0.377 |
39DAP/27DAP | 1.39451 | 0.623 |
41DAP/39DAP | 1.05056 | 0.868 |
42DAP/41DAP | 1.04539 | 0.907 |
43DAP/42DAP | 1.0264 | 1 |
47DAP/43DAP | 1.06467 | 0.902 |
52DAP/47DAP | 0.96413 | 0.893 |
57DAP/52DAP | 1.14071 | 0.523 |
57DAP/7DAP | 1.29102 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08222 | 0.472 |
17DAP/reference | 0.96292 | 0.338 |
27DAP/reference | 1.11483 | 0.371 |
39DAP/reference | 1.16081 | 0.149 |
41DAP/reference | 1.21045 | 0.075 |
42DAP/reference | 1.11508 | 0.686 |
43DAP/reference | 1.21638 | 0.124 |
47DAP/reference | 0.85637 | 0.168 |
52DAP/reference | 1.23217 | 0.071 |
57DAP/reference | 0.99208 | 0.61 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12238 | 0.315 |
17DAP/reference | 0.94128 | 0.487 |
27DAP/reference | 1.09702 | 0.271 |
39DAP/reference | 1.25718 | 0.355 |
41DAP/reference | 0.89859 | 0.024 |
42DAP/reference | 0.85611 | 0.046 |
43DAP/reference | 0.88102 | 0.307 |
47DAP/reference | 0.90503 | 0.12 |
52DAP/reference | 1.1637 | 0.471 |
57DAP/reference | 0.91417 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91006 | 0.249 |
17DAP/reference | 0.97581 | 0.658 |
27DAP/reference | 1.14912 | 0.408 |
39DAP/reference | 1.05897 | 0.528 |
41DAP/reference | 1.0559 | 0.818 |
42DAP/reference | 1.10501 | 0.529 |
43DAP/reference | 1.05385 | 0.88 |
47DAP/reference | 0.97247 | 0.509 |
52DAP/reference | 0.96965 | 0.675 |
57DAP/reference | 0.99295 | 0.672 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11025 | 1 |
26DAP/20DAP | 2.24353 | 0.137 |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 0.42472 | 0.088 |
52DAP/51DAP | 0.43125 | |
53DAP/52DAP | 1.07223 | 0.862 |
55DAP/53DAP | 1.24009 | 0.861 |
57DAP/55DAP | 2.61255 | |
62DAP/57DAP | 1.00962 | 1 |
68DAP/62DAP | 0.87853 | 0.747 |
68DAP/14DAP | 1.42316 | 0.211 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.66486 | 0.151 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.21852 | 0.523 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.30332 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.91476 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.31101 | |
12-2/M82 | 1.00683 | 1 |
12-4/M82 | 0.82065 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.38814 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.15638 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.90885 | 0.364 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.78991 | 0.243 |
IL2-6/WTpooled | 1.15392 | 0.456 |
IL7-5/WTpooled | 1.15546 | 0.622 |
IL7-3/WTpooled | 1.13422 | 0.362 |
IL12-4/WTpooled | 1.0832 | 0.737 |
IL1-4/WTpooled | 1.02051 | 1 |
WT/WTpooled | 1.02471 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06424 | 0.894 |
DC3000/delta hrp 6h | 1.10448 | 1 |
DC3000/delta hrp 12h | 1.03411 | 1 |
DC3000/delta hrp 24h | 0.77726 | 0.072 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9873 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 1.17863 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.97172 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94252 | 0.12 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.26724 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08626 | 0.307 |
Manapal/WT (break) | 1.52843 | 0.14 |
Manapal/WT (red) | 1.11871 | 0.164 |
|
|