Expression of 1-1-3.4.6.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05001 | 0.786 |
27DAP/17DAP | 1.21407 | 0.788 |
39DAP/27DAP | 0.96958 | 0.719 |
41DAP/39DAP | 1.29887 | 0.214 |
42DAP/41DAP | 0.91498 | 1 |
43DAP/42DAP | 0.9259 | 0.801 |
47DAP/43DAP | 1.07399 | 0.481 |
52DAP/47DAP | 1.22426 | 0.601 |
57DAP/52DAP | 0.9084 | 0.81 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8412 | 0.047 |
17DAP/reference | 0.91487 | 0.069 |
27DAP/reference | 0.99399 | 0.797 |
39DAP/reference | 1.01377 | 0.92 |
41DAP/reference | 1.0141 | 0.963 |
42DAP/reference | 0.8705 | 0.015 |
43DAP/reference | 0.99156 | 0.805 |
47DAP/reference | 0.92647 | 0.207 |
52DAP/reference | 0.87561 | 0.06 |
57DAP/reference | 0.90906 | 0.156 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91297 | 0.26 |
27DAP/17DAP | 1.035 | 0.909 |
39DAP/27DAP | 1.02463 | 0.758 |
41DAP/39DAP | 1.0557 | 0.909 |
42DAP/41DAP | 0.915 | 0.503 |
43DAP/42DAP | 1.12581 | 0.052 |
47DAP/43DAP | 0.95048 | 0.855 |
52DAP/47DAP | 0.99503 | 0.962 |
57DAP/52DAP | 0.95699 | 0.501 |
57DAP/7DAP | 0.99443 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.55774 | 0.037 |
17DAP/reference | 2.09066 | 0.006 |
27DAP/reference | 2.39439 | 0.007 |
39DAP/reference | 3.00938 | 0.005 |
41DAP/reference | 2.87711 | 0.01 |
42DAP/reference | 2.61928 | 0.006 |
43DAP/reference | 2.7229 | 0.007 |
47DAP/reference | 1.43927 | 0.413 |
52DAP/reference | 2.69713 | 0.007 |
57DAP/reference | 2.02533 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14913 | 0.258 |
17DAP/reference | 0.94875 | 0.317 |
27DAP/reference | 0.88716 | 0.09 |
39DAP/reference | 0.92203 | 0.147 |
41DAP/reference | 1.0077 | 0.702 |
42DAP/reference | 0.91987 | 0.169 |
43DAP/reference | 0.99754 | 0.681 |
47DAP/reference | 0.92939 | 0.12 |
52DAP/reference | 1.07038 | 0.259 |
57DAP/reference | 1.00949 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53659 | 0.022 |
17DAP/reference | 1.25263 | 0.699 |
27DAP/reference | 1.91988 | 0.02 |
39DAP/reference | 1.92741 | 0.01 |
41DAP/reference | 2.08065 | 0.011 |
42DAP/reference | 1.71794 | 0.017 |
43DAP/reference | 1.76976 | 0.047 |
47DAP/reference | 1.05194 | 0.63 |
52DAP/reference | 1.52936 | 0.209 |
57DAP/reference | 1.32082 | 0.2 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09068 | 0.966 |
26DAP/20DAP | 0.95153 | 0.512 |
34DAP/26DAP | 1.03724 | 0.819 |
51DAP/34DAP | 0.98814 | 0.893 |
52DAP/51DAP | 0.99835 | 1 |
53DAP/52DAP | 0.96391 | 0.803 |
55DAP/53DAP | 0.95461 | 0.735 |
57DAP/55DAP | 1.08927 | 0.474 |
62DAP/57DAP | 1.10615 | 0.723 |
68DAP/62DAP | 1.12906 | 0.367 |
68DAP/14DAP | 1.55071 | 0.346 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96228 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.17634 | 0.185 |
Immature Eggplant/Mature Eggplant | 1.36218 | |
Ripe Pepper/Ripe Tomato | 0.82312 | 1 |
Mature Eggplant/Ripe Tomato | 1.62817 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99275 | 1 |
1-1-2/M82 | 0.96415 | 1 |
12-2/M82 | 1.03099 | 1 |
12-4/M82 | 0.99598 | 1 |
1-3/M82 | 0.9335 | 0.501 |
2-1-1/M82 | 1.16915 | 0.689 |
2-1/M82 | 0.82211 | |
2-6/M82 | 1.14266 | 0.452 |
3-2/M82 | 0.96545 | 1 |
4-1-1/M82 | 0.87486 | 1 |
4-1/M82 | 1.17536 | |
4-3-2/M82 | 0.88957 | 1 |
4-3/M82 | 0.88841 | 1 |
5-3/M82 | 0.97352 | 1 |
6-2/M82 | 1.11987 | 1 |
6-3/M82 | 0.90462 | 0.982 |
7-1/M82 | 1.00315 | |
7-2/M82 | 1.06918 | 1 |
9-3-2/M82 | 0.90203 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0577 | 1 |
IL2-6/WTpooled | 0.99755 | 1 |
IL7-5/WTpooled | 0.91857 | 1 |
IL7-3/WTpooled | 0.91833 | 1 |
IL12-4/WTpooled | 0.90181 | 0.581 |
IL1-4/WTpooled | 0.98283 | 1 |
WT/WTpooled | 0.9766 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00012 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9935 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.28893 | 1 |
DC3000/delta hrp 24h | 1.01796 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.92995 | 0.273 |
DC3000 delta B/DC3000 delta AB | 0.97074 | 0.456 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.58411 | 1 |
Exp 36h | 1.46971 | 0.489 |
Exp 60h | 1.30813 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98411 | 1 |
Var 0h | 1.04827 | 1 |
Var 12h I row2-row1 | 1.05474 | 0.204 |
Var 12h NI row2-row1 | 0.90095 | 0.546 |
Var 36h I row2-row1 | 0.99656 | 1 |
Var 36h NI row2-row1 | 1.16904 | 1 |
Var 60h I row2-row1 | 1.32719 | 1 |
Var 60h NI row2-row1 | 1.23178 | 0.904 |
Time course 0hI-0hNI | 1.06846 | 0.719 |
Time course 12hI-12hNI | 0.97869 | 0.82 |
Time course 36hI-36hNI | 0.90983 | 0.076 |
Time course 60hI-60hNI | 0.84572 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91668 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.54495 | 0.137 |
transgenic ySAMdc/azygous control (red) | 0.95842 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00198 | 0.909 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0045 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7585 | 0.172 |
Manapal/WT (break) | 0.84077 | 0.299 |
Manapal/WT (red) | 1.34014 | 0.222 |
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