Expression of 1-1-3.4.6.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.056120.977
27DAP/17DAP0.868660.593
39DAP/27DAP1.197850.825
41DAP/39DAP0.741260.182
42DAP/41DAP1.89790.102
43DAP/42DAP0.837150.77
47DAP/43DAP1.06320.779
52DAP/47DAP1.271120.819
57DAP/52DAP1.425010.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.253120.025
17DAP/reference1.296280.032
27DAP/reference1.292210.03
39DAP/reference1.179110.075
41DAP/reference1.345510.014
42DAP/reference1.629050.001
43DAP/reference1.24830.36
47DAP/reference1.82510.001
52DAP/reference1.124230.878
57DAP/reference1.198690.564

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.054961
27DAP/17DAP0.972640.943
39DAP/27DAP0.702910.361
41DAP/39DAP0.815950.158
42DAP/41DAP1.114250.824
43DAP/42DAPN/AN/A
47DAP/43DAP2.944640.01
52DAP/47DAP1.116780.804
57DAP/52DAP0.734920.043
57DAP/7DAP0.964981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.824150.402
17DAP/referenceN/AN/A
27DAP/reference0.62034
39DAP/reference0.37403
41DAP/reference1.70849
42DAP/reference1.35016
43DAP/reference0.40361
47DAP/reference1.452140.353
52DAP/referenceN/AN/A
57DAP/reference1.46686

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.6287
17DAP/reference1.712560.015
27DAP/reference1.15630.48
39DAP/reference1.758280.016
41DAP/reference1.010140.735
42DAP/reference1.12650.455
43DAP/reference1.256570.297
47DAP/reference0.976970.5
52DAP/reference1.522120.471
57DAP/reference1.304350.908

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.51333
17DAP/reference1.401920.665
27DAP/reference1.04994
39DAP/reference0.7153
41DAP/reference1.5977
42DAP/reference1.31493
43DAP/reference1.09370.79
47DAP/reference1.696030.063
52DAP/referenceN/AN/A
57DAP/reference1.208460.192

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.40937
26DAP/20DAP0.926911
34DAP/26DAP1.225851
51DAP/34DAP1.353480.171
52DAP/51DAP1.641
53DAP/52DAP1.467160.738
55DAP/53DAP6.574050.614
57DAP/55DAP1.485241
62DAP/57DAP0.616860.005
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.18494

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.115630.277
IL2-6/WTpooled1.080940.659
IL7-5/WTpooled1.160560.792
IL7-3/WTpooled1.124510.362
IL12-4/WTpooled1.04370.891
IL1-4/WTpooled1.059241
WT/WTpooled0.949541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03110.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.348450.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.115330.374
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.855171
Manapal/WT (red)0.937340.728