Expression of 1-1-3.4.7.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10128 | 0.851 |
27DAP/17DAP | 1.22661 | 0.809 |
39DAP/27DAP | 0.84466 | 0.397 |
41DAP/39DAP | 1.0036 | 0.962 |
42DAP/41DAP | 1.53148 | 0.477 |
43DAP/42DAP | 1.06551 | 1 |
47DAP/43DAP | 1.62318 | 0.595 |
52DAP/47DAP | 1.64627 | 0.213 |
57DAP/52DAP | 0.76277 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39345 | 0.01 |
17DAP/reference | 1.2962 | 0.178 |
27DAP/reference | 1.30864 | 0.008 |
39DAP/reference | 1.173 | 0.514 |
41DAP/reference | 1.75203 | 0.014 |
42DAP/reference | 1.61343 | 0.001 |
43DAP/reference | 1.08877 | 0.569 |
47DAP/reference | 1.32436 | 0.007 |
52DAP/reference | 1.27936 | 0.01 |
57DAP/reference | 1.00388 | 0.736 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.26333 | 0.569 |
27DAP/17DAP | 1.46053 | |
39DAP/27DAP | N/A | N/A |
41DAP/39DAP | 0.63619 | 0.781 |
42DAP/41DAP | 1.21156 | 0.999 |
43DAP/42DAP | 0.36404 | |
47DAP/43DAP | 1.02839 | 0.99 |
52DAP/47DAP | N/A | N/A |
57DAP/52DAP | 0.70805 | |
57DAP/7DAP | 0.77664 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | 0.97125 | 0.745 |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.91675 | |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.54976 | |
57DAP/reference | 0.88176 | |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99493 | 0.93 |
17DAP/reference | 1.16664 | 0.531 |
27DAP/reference | 1.19359 | 0.12 |
39DAP/reference | 1.35577 | 0.013 |
41DAP/reference | 1.31748 | 0.081 |
42DAP/reference | 1.22778 | 0.532 |
43DAP/reference | 1.55553 | 0.019 |
47DAP/reference | 1.25203 | 0.017 |
52DAP/reference | 1.48166 | 0.006 |
57DAP/reference | 1.83476 | 0.025 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | N/A | N/A |
41DAP/reference | N/A | N/A |
42DAP/reference | 1.45398 | 0.327 |
43DAP/reference | 1.42207 | |
47DAP/reference | 1.06619 | 0.593 |
52DAP/reference | 1.2685 | 0.132 |
57DAP/reference | 1.10223 | 0.758 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.68203 | 0.611 |
26DAP/20DAP | 0.65137 | |
34DAP/26DAP | 0.40797 | |
51DAP/34DAP | 1.14775 | 0.978 |
52DAP/51DAP | 0.97692 | 1 |
53DAP/52DAP | 1.3292 | 0.37 |
55DAP/53DAP | 1.70079 | 0.608 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | 1.43651 | 0.994 |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.84427 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.46174 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.59883 | |
IL2-6/WTpooled | 2.25972 | 1 |
IL7-5/WTpooled | 1.99189 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.68659 | 0.695 |
IL1-4/WTpooled | 1.14501 | 1 |
WT/WTpooled | 1.1338 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.90192 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.01345 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.8477 | 0.072 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.67974 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.4768 | 0.413 |
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