Expression of 1-1-3.4.7.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.101280.851
27DAP/17DAP1.226610.809
39DAP/27DAP0.844660.397
41DAP/39DAP1.00360.962
42DAP/41DAP1.531480.477
43DAP/42DAP1.065511
47DAP/43DAP1.623180.595
52DAP/47DAP1.646270.213
57DAP/52DAP0.762770.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.393450.01
17DAP/reference1.29620.178
27DAP/reference1.308640.008
39DAP/reference1.1730.514
41DAP/reference1.752030.014
42DAP/reference1.613430.001
43DAP/reference1.088770.569
47DAP/reference1.324360.007
52DAP/reference1.279360.01
57DAP/reference1.003880.736

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.263330.569
27DAP/17DAP1.46053
39DAP/27DAPN/AN/A
41DAP/39DAP0.636190.781
42DAP/41DAP1.211560.999
43DAP/42DAP0.36404
47DAP/43DAP1.028390.99
52DAP/47DAPN/AN/A
57DAP/52DAP0.70805
57DAP/7DAP0.77664

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference0.971250.745
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/reference1.91675
47DAP/referenceN/AN/A
52DAP/reference0.54976
57DAP/reference0.88176

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994930.93
17DAP/reference1.166640.531
27DAP/reference1.193590.12
39DAP/reference1.355770.013
41DAP/reference1.317480.081
42DAP/reference1.227780.532
43DAP/reference1.555530.019
47DAP/reference1.252030.017
52DAP/reference1.481660.006
57DAP/reference1.834760.025

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/referenceN/AN/A
42DAP/reference1.453980.327
43DAP/reference1.42207
47DAP/reference1.066190.593
52DAP/reference1.26850.132
57DAP/reference1.102230.758

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.682030.611
26DAP/20DAP0.65137
34DAP/26DAP0.40797
51DAP/34DAP1.147750.978
52DAP/51DAP0.976921
53DAP/52DAP1.32920.37
55DAP/53DAP1.700790.608
57DAP/55DAPN/AN/A
62DAP/57DAP1.436510.994
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.84427

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.46174

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.59883
IL2-6/WTpooled2.259721
IL7-5/WTpooled1.991891
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.686590.695
IL1-4/WTpooled1.145011
WT/WTpooled1.13381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.901921
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.013451
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.84770.072

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.679740.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.47680.413