Expression of 1-1-3.4.7.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.42031 | 0.303 |
27DAP/17DAP | 0.4974 | 0.03 |
39DAP/27DAP | 0.95845 | 0.583 |
41DAP/39DAP | 0.48987 | 0.041 |
42DAP/41DAP | 0.83084 | 1 |
43DAP/42DAP | 1.14739 | 0.906 |
47DAP/43DAP | 0.50163 | 0.049 |
52DAP/47DAP | 0.92765 | 0.779 |
57DAP/52DAP | 0.93185 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15284 | 0.872 |
17DAP/reference | 0.88581 | 0.18 |
27DAP/reference | 0.83704 | 0.013 |
39DAP/reference | 0.74325 | 0.085 |
41DAP/reference | 0.96836 | 0.814 |
42DAP/reference | 1.16443 | 0.05 |
43DAP/reference | 0.98635 | 0.763 |
47DAP/reference | 1.07126 | 0.329 |
52DAP/reference | 1.23747 | 0.167 |
57DAP/reference | 1.14513 | 0.321 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.851 | 0.388 |
27DAP/17DAP | 1.15009 | 0.768 |
39DAP/27DAP | 1.11243 | 0.691 |
41DAP/39DAP | 0.9272 | 0.849 |
42DAP/41DAP | 1.13658 | 0.508 |
43DAP/42DAP | 0.68042 | 0.024 |
47DAP/43DAP | 1.01258 | 0.923 |
52DAP/47DAP | 3.11346 | |
57DAP/52DAP | 1.78841 | 0.084 |
57DAP/7DAP | 3.62445 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09533 | 0.286 |
17DAP/reference | 1.3263 | 0.006 |
27DAP/reference | 1.40049 | 0.009 |
39DAP/reference | 1.04798 | 0.634 |
41DAP/reference | 1.17431 | |
42DAP/reference | 1.35728 | |
43DAP/reference | 1.40749 | 0.307 |
47DAP/reference | 0.87087 | |
52DAP/reference | 1.21314 | 0.062 |
57DAP/reference | 1.46287 | 0.003 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80964 | |
17DAP/reference | 0.96444 | 0.077 |
27DAP/reference | 1.01166 | 1 |
39DAP/reference | 1.16757 | 0.097 |
41DAP/reference | 1.02073 | 1 |
42DAP/reference | 1.05731 | 0.715 |
43DAP/reference | 0.82364 | 0.08 |
47DAP/reference | 0.97259 | 0.368 |
52DAP/reference | 1.16062 | 0.014 |
57DAP/reference | 1.09574 | 0.252 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12602 | 0.23 |
17DAP/reference | 1.02032 | 1 |
27DAP/reference | 1.69716 | 0.02 |
39DAP/reference | 1.41015 | 0.075 |
41DAP/reference | 1.27817 | 0.012 |
42DAP/reference | 1.52441 | 0.013 |
43DAP/reference | 1.38095 | 0.007 |
47DAP/reference | 1.03045 | 1 |
52DAP/reference | 1.40325 | |
57DAP/reference | 1.97781 | 0.023 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10743 | 0.966 |
26DAP/20DAP | 3.64899 | 0.683 |
34DAP/26DAP | 1.69243 | 1 |
51DAP/34DAP | 0.97877 | |
52DAP/51DAP | 5.13125 | 0.034 |
53DAP/52DAP | 0.71238 | 0.167 |
55DAP/53DAP | N/A | N/A |
57DAP/55DAP | 0.21642 | 0.059 |
62DAP/57DAP | 1.47862 | 0.133 |
68DAP/62DAP | 1.71968 | |
68DAP/14DAP | 2.49452 | 0.061 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.19326 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.74598 | 0.058 |
Mature Green Tomato/Ripe Tomato | 15.5699 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.40529 | 0.057 |
Ripe Pepper/Ripe Tomato | 39.3545 | 0.256 |
Mature Eggplant/Ripe Tomato | 65.558 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.01369 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98647 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.98209 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.55079 | |
5-3/M82 | 1.47683 | 0.496 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.11637 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.20145 | 0.493 |
IL2-6/WTpooled | 1.32926 | 0.584 |
IL7-5/WTpooled | 0.70206 | 1 |
IL7-3/WTpooled | 0.82545 | 0.418 |
IL12-4/WTpooled | 1.16608 | 0.891 |
IL1-4/WTpooled | 0.72831 | 0.402 |
WT/WTpooled | 1.03132 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99458 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97603 | 1 |
DC3000/delta hrp 6h | 0.9449 | 0.95 |
DC3000/delta hrp 12h | 1.02095 | 1 |
DC3000/delta hrp 24h | 0.96112 | 0.75 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.86767 | 0.213 |
DC3000 delta B/DC3000 delta AB | 0.86231 | 0.11 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9921 | 1 |
Var 0h | 1.69019 | 0.782 |
Var 12h I row2-row1 | 0.86828 | 0.363 |
Var 12h NI row2-row1 | 1.00398 | 1 |
Var 36h I row2-row1 | 0.85611 | 0.805 |
Var 36h NI row2-row1 | 1.05946 | 1 |
Var 60h I row2-row1 | 0.99669 | 1 |
Var 60h NI row2-row1 | 0.99306 | 1 |
Time course 0hI-0hNI | 0.98862 | 0.999 |
Time course 12hI-12hNI | 1.06613 | 0.544 |
Time course 36hI-36hNI | 0.96464 | 0.373 |
Time course 60hI-60hNI | 0.46138 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08771 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 3.88713 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.11561 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.4616 | 0.072 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.47459 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 30.4908 | 0.09 |
Manapal/WT (break) | 12.004 | 0.123 |
Manapal/WT (red) | 2.35604 | 0.413 |
|
|