Expression of 1-1-3.4.8.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.197290.534
27DAP/17DAP1.119470.873
39DAP/27DAP0.939790.652
41DAP/39DAP0.864580.475
42DAP/41DAP1.133740.894
43DAP/42DAP0.965820.863
47DAP/43DAP1.002880.953
52DAP/47DAP1.052070.999
57DAP/52DAP0.913460.783

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.74823
17DAP/reference0.804020.278
27DAP/reference1.064720.232
39DAP/reference1.185850.514
41DAP/reference1.619810.421
42DAP/reference0.59433
43DAP/reference0.766980.2
47DAP/reference0.618030.161
52DAP/reference1.377780.878
57DAP/reference0.979980.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.262620.224
27DAP/17DAP0.815720.187
39DAP/27DAP0.907720.274
41DAP/39DAP1.20210.14
42DAP/41DAP0.996220.876
43DAP/42DAP1.039220.788
47DAP/43DAP0.952770.734
52DAP/47DAP1.121580.635
57DAP/52DAP1.176530.333
57DAP/7DAP1.060051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944360.495
17DAP/reference0.657130.167
27DAP/reference0.04886
39DAP/reference0.761660.064
41DAP/reference0.902090.213
42DAP/reference0.785940.017
43DAP/reference0.735090.076
47DAP/reference1.017371
52DAP/reference0.874830.106
57DAP/reference1.042091

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.969320.736
17DAP/reference0.966940.548
27DAP/reference0.734790.327
39DAP/reference1.084970.556
41DAP/reference1.262050.491
42DAP/reference0.870290.289
43DAP/reference0.889220.292
47DAP/reference0.825820.116
52DAP/reference1.112470.702
57DAP/reference1.079160.98

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.391480.036
17DAP/reference1.334520.074
27DAP/reference3.73762
39DAP/reference0.77686
41DAP/reference1.292240.145
42DAP/reference1.054181
43DAP/reference1.40180.021
47DAP/reference0.659370.296
52DAP/reference0.688870.082
57DAP/reference0.873570.468

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.743031
26DAP/20DAP1.008041
34DAP/26DAP1.270460.819
51DAP/34DAP0.864370.419
52DAP/51DAP1.476590.075
53DAP/52DAP0.701790.049
55DAP/53DAP1.204020.128
57DAP/55DAP0.770760.202
62DAP/57DAP1.23570.034
68DAP/62DAP1.592410.323
68DAP/14DAP0.927561

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.852460.045

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.216990.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.20675
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.86141

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.754360.478
IL1-4/WTpooled0.99231
WT/WTpooled1.030711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.060311

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.10040.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.736411
DC3000/delta hrp 24h0.61530.126

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.689860.025
DC3000 delta B/DC3000 delta AB0.810650.114

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992441
Var 0h0.841410.933
Var 12h I row2-row10.824330.357
Var 12h NI row2-row10.945590.82
Var 36h I row2-row11.072551
Var 36h NI row2-row11.067611
Var 60h I row2-row10.994191
Var 60h NI row2-row11.015811
Time course 0hI-0hNI0.976740.908
Time course 12hI-12hNI0.993341
Time course 36hI-36hNI0.878150.112
Time course 60hI-60hNI0.335640.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control3.442590.026

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.142950.307
Manapal/WT (break)0.957651
Manapal/WT (red)1.183530.164