Expression of 1-1-3.4.8.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19729 | 0.534 |
27DAP/17DAP | 1.11947 | 0.873 |
39DAP/27DAP | 0.93979 | 0.652 |
41DAP/39DAP | 0.86458 | 0.475 |
42DAP/41DAP | 1.13374 | 0.894 |
43DAP/42DAP | 0.96582 | 0.863 |
47DAP/43DAP | 1.00288 | 0.953 |
52DAP/47DAP | 1.05207 | 0.999 |
57DAP/52DAP | 0.91346 | 0.783 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74823 | |
17DAP/reference | 0.80402 | 0.278 |
27DAP/reference | 1.06472 | 0.232 |
39DAP/reference | 1.18585 | 0.514 |
41DAP/reference | 1.61981 | 0.421 |
42DAP/reference | 0.59433 | |
43DAP/reference | 0.76698 | 0.2 |
47DAP/reference | 0.61803 | 0.161 |
52DAP/reference | 1.37778 | 0.878 |
57DAP/reference | 0.97998 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.26262 | 0.224 |
27DAP/17DAP | 0.81572 | 0.187 |
39DAP/27DAP | 0.90772 | 0.274 |
41DAP/39DAP | 1.2021 | 0.14 |
42DAP/41DAP | 0.99622 | 0.876 |
43DAP/42DAP | 1.03922 | 0.788 |
47DAP/43DAP | 0.95277 | 0.734 |
52DAP/47DAP | 1.12158 | 0.635 |
57DAP/52DAP | 1.17653 | 0.333 |
57DAP/7DAP | 1.06005 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94436 | 0.495 |
17DAP/reference | 0.65713 | 0.167 |
27DAP/reference | 0.04886 | |
39DAP/reference | 0.76166 | 0.064 |
41DAP/reference | 0.90209 | 0.213 |
42DAP/reference | 0.78594 | 0.017 |
43DAP/reference | 0.73509 | 0.076 |
47DAP/reference | 1.01737 | 1 |
52DAP/reference | 0.87483 | 0.106 |
57DAP/reference | 1.04209 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96932 | 0.736 |
17DAP/reference | 0.96694 | 0.548 |
27DAP/reference | 0.73479 | 0.327 |
39DAP/reference | 1.08497 | 0.556 |
41DAP/reference | 1.26205 | 0.491 |
42DAP/reference | 0.87029 | 0.289 |
43DAP/reference | 0.88922 | 0.292 |
47DAP/reference | 0.82582 | 0.116 |
52DAP/reference | 1.11247 | 0.702 |
57DAP/reference | 1.07916 | 0.98 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39148 | 0.036 |
17DAP/reference | 1.33452 | 0.074 |
27DAP/reference | 3.73762 | |
39DAP/reference | 0.77686 | |
41DAP/reference | 1.29224 | 0.145 |
42DAP/reference | 1.05418 | 1 |
43DAP/reference | 1.4018 | 0.021 |
47DAP/reference | 0.65937 | 0.296 |
52DAP/reference | 0.68887 | 0.082 |
57DAP/reference | 0.87357 | 0.468 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.74303 | 1 |
26DAP/20DAP | 1.00804 | 1 |
34DAP/26DAP | 1.27046 | 0.819 |
51DAP/34DAP | 0.86437 | 0.419 |
52DAP/51DAP | 1.47659 | 0.075 |
53DAP/52DAP | 0.70179 | 0.049 |
55DAP/53DAP | 1.20402 | 0.128 |
57DAP/55DAP | 0.77076 | 0.202 |
62DAP/57DAP | 1.2357 | 0.034 |
68DAP/62DAP | 1.59241 | 0.323 |
68DAP/14DAP | 0.92756 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85246 | 0.045 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.21699 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.20675 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.86141 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.75436 | 0.478 |
IL1-4/WTpooled | 0.99231 | |
WT/WTpooled | 1.03071 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06031 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.1004 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.73641 | 1 |
DC3000/delta hrp 24h | 0.6153 | 0.126 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.68986 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.81065 | 0.114 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99244 | 1 |
Var 0h | 0.84141 | 0.933 |
Var 12h I row2-row1 | 0.82433 | 0.357 |
Var 12h NI row2-row1 | 0.94559 | 0.82 |
Var 36h I row2-row1 | 1.07255 | 1 |
Var 36h NI row2-row1 | 1.06761 | 1 |
Var 60h I row2-row1 | 0.99419 | 1 |
Var 60h NI row2-row1 | 1.01581 | 1 |
Time course 0hI-0hNI | 0.97674 | 0.908 |
Time course 12hI-12hNI | 0.99334 | 1 |
Time course 36hI-36hNI | 0.87815 | 0.112 |
Time course 60hI-60hNI | 0.33564 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 3.44259 | 0.026 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.14295 | 0.307 |
Manapal/WT (break) | 0.95765 | 1 |
Manapal/WT (red) | 1.18353 | 0.164 |
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