Expression of 1-1-3.4.9.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.607640.044
27DAP/17DAP0.864990.609
39DAP/27DAP0.79690.487
41DAP/39DAP0.779370.311
42DAP/41DAP1.071450.916
43DAP/42DAP1.035410.945
47DAP/43DAP1.203560.497
52DAP/47DAP0.947770.765
57DAP/52DAP1.034820.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.365370.01
17DAP/reference1.312940.019
27DAP/reference1.329020.043
39DAP/reference1.311980.012
41DAP/reference1.157310.203
42DAP/reference1.099920.324
43DAP/reference1.15140.074
47DAP/reference1.243710.028
52DAP/reference0.946160.292
57DAP/reference1.126180.088

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.522680.036
27DAP/17DAP0.754880.614
39DAP/27DAP0.722040.058
41DAP/39DAP1.002591
42DAP/41DAP0.799570.067
43DAP/42DAP0.858710.039
47DAP/43DAP1.32880.833
52DAP/47DAP0.885460.321
57DAP/52DAP1.068060.874
57DAP/7DAP1.005531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.020111
17DAP/reference1.214520.134
27DAP/reference1.133090.197
39DAP/reference1.220660.198
41DAP/reference1.009490.778
42DAP/reference0.921120.275
43DAP/reference1.251580.083
47DAP/reference0.89760.293
52DAP/reference0.932950.254
57DAP/reference1.195530.04

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.11960.612
17DAP/reference1.427910.008
27DAP/reference1.238830.04
39DAP/reference1.094680.366
41DAP/reference0.982290.481
42DAP/reference1.053610.759
43DAP/reference1.48260.011
47DAP/reference1.196450.061
52DAP/reference1.148740.043
57DAP/reference1.074040.688

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.030320.963
17DAP/reference1.22950.111
27DAP/reference1.274650.026
39DAP/reference1.219390.016
41DAP/reference0.962650.512
42DAP/reference0.956690.552
43DAP/reference1.019121
47DAP/reference1.371540.011
52DAP/reference1.112990.683
57DAP/reference1.026930.902

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.190970.966
26DAP/20DAP1.092930.931
34DAP/26DAP1.523980.154
51DAP/34DAP1.341860.785
52DAP/51DAP1.002071
53DAP/52DAP0.955930.807
55DAP/53DAP0.90950.404
57DAP/55DAP1.383810.584
62DAP/57DAP0.850230.162
68DAP/62DAP0.849240.152
68DAP/14DAP1.00241

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.666950.076

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.71918
Mature Green Tomato/Ripe Tomato2.486440.017
Immature Eggplant/Mature Eggplant0.79385
Ripe Pepper/Ripe Tomato2.418240.251
Mature Eggplant/Ripe Tomato1.021381

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.99752
12-2/M820.97224
12-4/M82N/AN/A
1-3/M820.62098
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.049761
3-2/M821.11798
4-1-1/M821.19294
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.83878
6-2/M820.58435
6-3/M821.02354
7-1/M82N/AN/A
7-2/M821.33873
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.788851
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.46704
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.88753
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.974441

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.031810.921
DC3000/delta hrp 6h0.958150.95
DC3000/delta hrp 12h1.057721
DC3000/delta hrp 24h0.861320.105

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.84965

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.741091
Exp 36h0.976790.943
Exp 60h0.756540.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018671
Var 0h0.918380.933
Var 12h I row2-row10.872690.357
Var 12h NI row2-row10.983420.906
Var 36h I row2-row10.871610.202
Var 36h NI row2-row11.253020.253
Var 60h I row2-row11.097410.543
Var 60h NI row2-row11.019311
Time course 0hI-0hNI0.932110.522
Time course 12hI-12hNI0.943210.306
Time course 36hI-36hNI0.771390.023
Time course 60hI-60hNI0.77960.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.056620.384
transgenic ySAMdc/azygous control (breaker)1.246440.248
transgenic ySAMdc/azygous control (red)0.995461

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.041220.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.204060.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.244360.083
Manapal/WT (break)1.439990.14
Manapal/WT (red)2.082170.126