Expression of 1-1-4.1.1.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01939 | 1 |
27DAP/17DAP | 0.92548 | 0.863 |
39DAP/27DAP | 0.92282 | 0.573 |
41DAP/39DAP | 1.18303 | 0.376 |
42DAP/41DAP | 0.94216 | 1 |
43DAP/42DAP | 1.08359 | 1 |
47DAP/43DAP | 0.87347 | 0.576 |
52DAP/47DAP | 1.00107 | 0.991 |
57DAP/52DAP | 1.06409 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02877 | 0.544 |
17DAP/reference | 1.05019 | 0.172 |
27DAP/reference | 1.12146 | 0.041 |
39DAP/reference | 1.07041 | 0.117 |
41DAP/reference | 1.13836 | 0.027 |
42DAP/reference | 0.99862 | 0.628 |
43DAP/reference | 1.00142 | 0.924 |
47DAP/reference | 1.0201 | 0.773 |
52DAP/reference | 0.95518 | 0.393 |
57DAP/reference | 0.93242 | 0.199 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99038 | 0.763 |
27DAP/17DAP | 0.99306 | 0.919 |
39DAP/27DAP | 0.99726 | 1 |
41DAP/39DAP | 1.03716 | 0.719 |
42DAP/41DAP | 0.95937 | 0.612 |
43DAP/42DAP | 1.00424 | 0.788 |
47DAP/43DAP | 0.98161 | 0.833 |
52DAP/47DAP | 0.98459 | 0.907 |
57DAP/52DAP | 0.93887 | 0.349 |
57DAP/7DAP | 0.96916 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86825 | 0.071 |
17DAP/reference | 0.8098 | 0.014 |
27DAP/reference | 0.85036 | 0.033 |
39DAP/reference | 0.89293 | 0.146 |
41DAP/reference | 0.89665 | 0.116 |
42DAP/reference | 0.81893 | 0.021 |
43DAP/reference | 0.7066 | 0.016 |
47DAP/reference | 0.84726 | 0.05 |
52DAP/reference | 0.70285 | 0.015 |
57DAP/reference | 0.76967 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03834 | 0.626 |
17DAP/reference | 1.06645 | 0.11 |
27DAP/reference | 0.96758 | 0.366 |
39DAP/reference | 0.94385 | 0.208 |
41DAP/reference | 0.9291 | 0.058 |
42DAP/reference | 0.95795 | 0.135 |
43DAP/reference | 1.04889 | 0.745 |
47DAP/reference | 0.98558 | 0.5 |
52DAP/reference | 1.01742 | 0.938 |
57DAP/reference | 1.06232 | 0.037 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85641 | 0.098 |
17DAP/reference | 0.94681 | 0.452 |
27DAP/reference | 0.76102 | 0.038 |
39DAP/reference | 0.73418 | 0.012 |
41DAP/reference | 0.82533 | 0.055 |
42DAP/reference | 0.77698 | 0.025 |
43DAP/reference | 0.70271 | 0.027 |
47DAP/reference | 0.9441 | 0.24 |
52DAP/reference | 0.88796 | 0.262 |
57DAP/reference | 0.78686 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04332 | 0.752 |
26DAP/20DAP | 0.97723 | 1 |
34DAP/26DAP | 1.14782 | 0.819 |
51DAP/34DAP | 1.00354 | 1 |
52DAP/51DAP | 0.98014 | 1 |
53DAP/52DAP | 1.01267 | 1 |
55DAP/53DAP | 0.95292 | 0.53 |
57DAP/55DAP | 1.12971 | 0.826 |
62DAP/57DAP | 0.90596 | 0.681 |
68DAP/62DAP | 0.9742 | 0.885 |
68DAP/14DAP | 0.91547 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.01081 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.19264 | 0.063 |
Mature Green Tomato/Ripe Tomato | 1.11373 | 0.881 |
Immature Eggplant/Mature Eggplant | 1.09479 | 0.334 |
Ripe Pepper/Ripe Tomato | 2.19647 | |
Mature Eggplant/Ripe Tomato | 1.93495 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92303 | 0.944 |
1-1-2/M82 | 1.10496 | 1 |
12-2/M82 | 1.00959 | 1 |
12-4/M82 | 0.98711 | 1 |
1-3/M82 | 0.91404 | 0.441 |
2-1-1/M82 | 1.02359 | 0.284 |
2-1/M82 | 1.07974 | |
2-6/M82 | 0.98621 | 1 |
3-2/M82 | 0.90403 | 0.752 |
4-1-1/M82 | 1.01757 | 1 |
4-1/M82 | 1.05159 | |
4-3-2/M82 | 1.06184 | 0.508 |
4-3/M82 | 0.98302 | 1 |
5-3/M82 | 0.98858 | 1 |
6-2/M82 | 1.0859 | 1 |
6-3/M82 | 1.05581 | 1 |
7-1/M82 | 0.94621 | 0.803 |
7-2/M82 | 1.12109 | 1 |
9-3-2/M82 | 0.97527 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01854 | 0.493 |
IL2-6/WTpooled | 1.20322 | 0.788 |
IL7-5/WTpooled | 0.90875 | 1 |
IL7-3/WTpooled | 1.09321 | 0.362 |
IL12-4/WTpooled | 1.02598 | 0.785 |
IL1-4/WTpooled | 1.03418 | 1 |
WT/WTpooled | 1.09553 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0191 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98871 | 1 |
DC3000/delta hrp 6h | 1.00751 | 0.95 |
DC3000/delta hrp 12h | 0.94172 | 1 |
DC3000/delta hrp 24h | 0.97826 | 0.924 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.14389 | 0.046 |
DC3000 delta B/DC3000 delta AB | 1.04986 | 0.498 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97866 | 1 |
Exp 36h | 0.88954 | 0.623 |
Exp 60h | 1.06461 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99717 | 1 |
Var 0h | 0.9884 | 1 |
Var 12h I row2-row1 | 1.1185 | 0.348 |
Var 12h NI row2-row1 | 0.96256 | 0.82 |
Var 36h I row2-row1 | 1.11182 | 1 |
Var 36h NI row2-row1 | 0.89925 | 0.61 |
Var 60h I row2-row1 | 1.13897 | 0.562 |
Var 60h NI row2-row1 | 1.05559 | 0.904 |
Time course 0hI-0hNI | 1.03889 | 0.852 |
Time course 12hI-12hNI | 0.9903 | 0.978 |
Time course 36hI-36hNI | 0.94708 | 0.373 |
Time course 60hI-60hNI | 0.92616 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88335 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.96762 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.42813 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0031 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.10467 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.29329 | 1 |
Manapal/WT (break) | 1.1646 | 1 |
Manapal/WT (red) | 1.10983 | 1 |
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