Expression of 1-1-4.1.1.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.019391
27DAP/17DAP0.925480.863
39DAP/27DAP0.922820.573
41DAP/39DAP1.183030.376
42DAP/41DAP0.942161
43DAP/42DAP1.083591
47DAP/43DAP0.873470.576
52DAP/47DAP1.001070.991
57DAP/52DAP1.064090.96

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.028770.544
17DAP/reference1.050190.172
27DAP/reference1.121460.041
39DAP/reference1.070410.117
41DAP/reference1.138360.027
42DAP/reference0.998620.628
43DAP/reference1.001420.924
47DAP/reference1.02010.773
52DAP/reference0.955180.393
57DAP/reference0.932420.199

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990380.763
27DAP/17DAP0.993060.919
39DAP/27DAP0.997261
41DAP/39DAP1.037160.719
42DAP/41DAP0.959370.612
43DAP/42DAP1.004240.788
47DAP/43DAP0.981610.833
52DAP/47DAP0.984590.907
57DAP/52DAP0.938870.349
57DAP/7DAP0.969161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.868250.071
17DAP/reference0.80980.014
27DAP/reference0.850360.033
39DAP/reference0.892930.146
41DAP/reference0.896650.116
42DAP/reference0.818930.021
43DAP/reference0.70660.016
47DAP/reference0.847260.05
52DAP/reference0.702850.015
57DAP/reference0.769670.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.038340.626
17DAP/reference1.066450.11
27DAP/reference0.967580.366
39DAP/reference0.943850.208
41DAP/reference0.92910.058
42DAP/reference0.957950.135
43DAP/reference1.048890.745
47DAP/reference0.985580.5
52DAP/reference1.017420.938
57DAP/reference1.062320.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.856410.098
17DAP/reference0.946810.452
27DAP/reference0.761020.038
39DAP/reference0.734180.012
41DAP/reference0.825330.055
42DAP/reference0.776980.025
43DAP/reference0.702710.027
47DAP/reference0.94410.24
52DAP/reference0.887960.262
57DAP/reference0.786860.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.043320.752
26DAP/20DAP0.977231
34DAP/26DAP1.147820.819
51DAP/34DAP1.003541
52DAP/51DAP0.980141
53DAP/52DAP1.012671
55DAP/53DAP0.952920.53
57DAP/55DAP1.129710.826
62DAP/57DAP0.905960.681
68DAP/62DAP0.97420.885
68DAP/14DAP0.915470.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.010811

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.192640.063
Mature Green Tomato/Ripe Tomato1.113730.881
Immature Eggplant/Mature Eggplant1.094790.334
Ripe Pepper/Ripe Tomato2.19647
Mature Eggplant/Ripe Tomato1.934950.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.923030.944
1-1-2/M821.104961
12-2/M821.009591
12-4/M820.987111
1-3/M820.914040.441
2-1-1/M821.023590.284
2-1/M821.07974
2-6/M820.986211
3-2/M820.904030.752
4-1-1/M821.017571
4-1/M821.05159
4-3-2/M821.061840.508
4-3/M820.983021
5-3/M820.988581
6-2/M821.08591
6-3/M821.055811
7-1/M820.946210.803
7-2/M821.121091
9-3-2/M820.975271

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.018540.493
IL2-6/WTpooled1.203220.788
IL7-5/WTpooled0.908751
IL7-3/WTpooled1.093210.362
IL12-4/WTpooled1.025980.785
IL1-4/WTpooled1.034181
WT/WTpooled1.095531

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.01911

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.988711
DC3000/delta hrp 6h1.007510.95
DC3000/delta hrp 12h0.941721
DC3000/delta hrp 24h0.978260.924

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.143890.046
DC3000 delta B/DC3000 delta AB1.049860.498

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.978661
Exp 36h0.889540.623
Exp 60h1.064611

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997171
Var 0h0.98841
Var 12h I row2-row11.11850.348
Var 12h NI row2-row10.962560.82
Var 36h I row2-row11.111821
Var 36h NI row2-row10.899250.61
Var 60h I row2-row11.138970.562
Var 60h NI row2-row11.055590.904
Time course 0hI-0hNI1.038890.852
Time course 12hI-12hNI0.99030.978
Time course 36hI-36hNI0.947080.373
Time course 60hI-60hNI0.926160.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.883350.314
transgenic ySAMdc/azygous control (breaker)1.967620.178
transgenic ySAMdc/azygous control (red)1.428130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.00310.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.104670.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.293291
Manapal/WT (break)1.16461
Manapal/WT (red)1.109831