Expression of 1-1-4.1.1.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.722720.083
27DAP/17DAP1.121030.88
39DAP/27DAP1.050741
41DAP/39DAP1.108970.591
42DAP/41DAP0.822160.774
43DAP/42DAP0.866970.713
47DAP/43DAP0.95730.825
52DAP/47DAP0.96760.823
57DAP/52DAP0.999260.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.071840.522
17DAP/reference0.994010.858
27DAP/reference0.98040.668
39DAP/reference0.997790.941
41DAP/reference1.060470.365
42DAP/reference0.905590.019
43DAP/reference0.989070.805
47DAP/reference0.899670.035
52DAP/reference1.011741
57DAP/reference0.995020.671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031210.899
27DAP/17DAP1.547860.068
39DAP/27DAP1.069170.677
41DAP/39DAP1.141830.565
42DAP/41DAP1.047160.961
43DAP/42DAP1.213840.147
47DAP/43DAP0.843550.387
52DAP/47DAP0.900690.666
57DAP/52DAP0.978980.763
57DAP/7DAP1.03291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.867030.04
17DAP/reference2.115870.006
27DAP/reference2.992190.006
39DAP/reference2.103880.005
41DAP/reference2.516360.01
42DAP/reference2.914340.006
43DAP/reference2.566120.006
47DAP/reference1.848590.099
52DAP/reference2.859450.007
57DAP/reference2.24890.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.042970.915
17DAP/reference1.05510.311
27DAP/reference1.047490.834
39DAP/reference1.074150.657
41DAP/reference0.968410.393
42DAP/reference1.046530.466
43DAP/reference1.261920.097
47DAP/reference1.085150.098
52DAP/reference1.065360.393
57DAP/reference1.005610.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.424230.119
17DAP/reference1.086660.775
27DAP/reference1.676760.022
39DAP/reference2.004960.012
41DAP/reference1.793640.01
42DAP/reference2.451030.011
43DAP/reference1.646770.028
47DAP/reference0.997870.731
52DAP/reference1.701690.517
57DAP/reference1.486420.304

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.413420.966
26DAP/20DAP1.283850.409
34DAP/26DAP1.268461
51DAP/34DAP1.351790.073
52DAP/51DAP1.126730.556
53DAP/52DAP0.67740.079
55DAP/53DAP0.959050.784
57DAP/55DAP1.103380.854
62DAP/57DAPN/AN/A
68DAP/62DAP1.204550.872
68DAP/14DAP1.134470.328

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.686590.076

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.009911
Mature Green Tomato/Ripe Tomato0.244910.02
Immature Eggplant/Mature Eggplant1.229980.054
Ripe Pepper/Ripe Tomato1.857860.244
Mature Eggplant/Ripe Tomato1.353760.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.946490.736
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.873870.282
1-3/M820.37244
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.01703
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.83918
5-3/M821.044871
6-2/M82N/AN/A
6-3/M821.19183
7-1/M821.10677
7-2/M821.01265
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.854860.247
IL2-6/WTpooled1.047661
IL7-5/WTpooled1.127491
IL7-3/WTpooled0.925141
IL12-4/WTpooled1.125880.839
IL1-4/WTpooled0.828820.562
WT/WTpooled1.108251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.160721

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.107770.921
DC3000/delta hrp 6h1.209260.777
DC3000/delta hrp 12h1.014611
DC3000/delta hrp 24h1.568430.035

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.275620.476
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.178891
Exp 36h0.921690.82
Exp 60h0.846660.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.065651
Var 0h0.987591
Var 12h I row2-row11.10020.208
Var 12h NI row2-row11.154440.235
Var 36h I row2-row11.115910.742
Var 36h NI row2-row11.10604
Var 60h I row2-row10.963360.582
Var 60h NI row2-row10.680970.298
Time course 0hI-0hNI0.809170.475
Time course 12hI-12hNI1.667360.008
Time course 36hI-36hNI1.662770.01
Time course 60hI-60hNI2.168670.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.040420.455
transgenic ySAMdc/azygous control (breaker)0.628860.131
transgenic ySAMdc/azygous control (red)1.054220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.061110.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.063040.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.820650.172
Manapal/WT (break)0.868191
Manapal/WT (red)0.597890.181