Expression of 1-1-4.1.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.72272 | 0.083 |
27DAP/17DAP | 1.12103 | 0.88 |
39DAP/27DAP | 1.05074 | 1 |
41DAP/39DAP | 1.10897 | 0.591 |
42DAP/41DAP | 0.82216 | 0.774 |
43DAP/42DAP | 0.86697 | 0.713 |
47DAP/43DAP | 0.9573 | 0.825 |
52DAP/47DAP | 0.9676 | 0.823 |
57DAP/52DAP | 0.99926 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07184 | 0.522 |
17DAP/reference | 0.99401 | 0.858 |
27DAP/reference | 0.9804 | 0.668 |
39DAP/reference | 0.99779 | 0.941 |
41DAP/reference | 1.06047 | 0.365 |
42DAP/reference | 0.90559 | 0.019 |
43DAP/reference | 0.98907 | 0.805 |
47DAP/reference | 0.89967 | 0.035 |
52DAP/reference | 1.01174 | 1 |
57DAP/reference | 0.99502 | 0.671 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03121 | 0.899 |
27DAP/17DAP | 1.54786 | 0.068 |
39DAP/27DAP | 1.06917 | 0.677 |
41DAP/39DAP | 1.14183 | 0.565 |
42DAP/41DAP | 1.04716 | 0.961 |
43DAP/42DAP | 1.21384 | 0.147 |
47DAP/43DAP | 0.84355 | 0.387 |
52DAP/47DAP | 0.90069 | 0.666 |
57DAP/52DAP | 0.97898 | 0.763 |
57DAP/7DAP | 1.0329 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.86703 | 0.04 |
17DAP/reference | 2.11587 | 0.006 |
27DAP/reference | 2.99219 | 0.006 |
39DAP/reference | 2.10388 | 0.005 |
41DAP/reference | 2.51636 | 0.01 |
42DAP/reference | 2.91434 | 0.006 |
43DAP/reference | 2.56612 | 0.006 |
47DAP/reference | 1.84859 | 0.099 |
52DAP/reference | 2.85945 | 0.007 |
57DAP/reference | 2.2489 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04297 | 0.915 |
17DAP/reference | 1.0551 | 0.311 |
27DAP/reference | 1.04749 | 0.834 |
39DAP/reference | 1.07415 | 0.657 |
41DAP/reference | 0.96841 | 0.393 |
42DAP/reference | 1.04653 | 0.466 |
43DAP/reference | 1.26192 | 0.097 |
47DAP/reference | 1.08515 | 0.098 |
52DAP/reference | 1.06536 | 0.393 |
57DAP/reference | 1.00561 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42423 | 0.119 |
17DAP/reference | 1.08666 | 0.775 |
27DAP/reference | 1.67676 | 0.022 |
39DAP/reference | 2.00496 | 0.012 |
41DAP/reference | 1.79364 | 0.01 |
42DAP/reference | 2.45103 | 0.011 |
43DAP/reference | 1.64677 | 0.028 |
47DAP/reference | 0.99787 | 0.731 |
52DAP/reference | 1.70169 | 0.517 |
57DAP/reference | 1.48642 | 0.304 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.41342 | 0.966 |
26DAP/20DAP | 1.28385 | 0.409 |
34DAP/26DAP | 1.26846 | 1 |
51DAP/34DAP | 1.35179 | 0.073 |
52DAP/51DAP | 1.12673 | 0.556 |
53DAP/52DAP | 0.6774 | 0.079 |
55DAP/53DAP | 0.95905 | 0.784 |
57DAP/55DAP | 1.10338 | 0.854 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.20455 | 0.872 |
68DAP/14DAP | 1.13447 | 0.328 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.68659 | 0.076 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00991 | 1 |
Mature Green Tomato/Ripe Tomato | 0.24491 | 0.02 |
Immature Eggplant/Mature Eggplant | 1.22998 | 0.054 |
Ripe Pepper/Ripe Tomato | 1.85786 | 0.244 |
Mature Eggplant/Ripe Tomato | 1.35376 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94649 | 0.736 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.87387 | 0.282 |
1-3/M82 | 0.37244 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.01703 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.83918 | |
5-3/M82 | 1.04487 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.19183 | |
7-1/M82 | 1.10677 | |
7-2/M82 | 1.01265 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.85486 | 0.247 |
IL2-6/WTpooled | 1.04766 | 1 |
IL7-5/WTpooled | 1.12749 | 1 |
IL7-3/WTpooled | 0.92514 | 1 |
IL12-4/WTpooled | 1.12588 | 0.839 |
IL1-4/WTpooled | 0.82882 | 0.562 |
WT/WTpooled | 1.10825 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16072 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10777 | 0.921 |
DC3000/delta hrp 6h | 1.20926 | 0.777 |
DC3000/delta hrp 12h | 1.01461 | 1 |
DC3000/delta hrp 24h | 1.56843 | 0.035 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.27562 | 0.476 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17889 | 1 |
Exp 36h | 0.92169 | 0.82 |
Exp 60h | 0.84666 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06565 | 1 |
Var 0h | 0.98759 | 1 |
Var 12h I row2-row1 | 1.1002 | 0.208 |
Var 12h NI row2-row1 | 1.15444 | 0.235 |
Var 36h I row2-row1 | 1.11591 | 0.742 |
Var 36h NI row2-row1 | 1.10604 | |
Var 60h I row2-row1 | 0.96336 | 0.582 |
Var 60h NI row2-row1 | 0.68097 | 0.298 |
Time course 0hI-0hNI | 0.80917 | 0.475 |
Time course 12hI-12hNI | 1.66736 | 0.008 |
Time course 36hI-36hNI | 1.66277 | 0.01 |
Time course 60hI-60hNI | 2.16867 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04042 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 0.62886 | 0.131 |
transgenic ySAMdc/azygous control (red) | 1.05422 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06111 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06304 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82065 | 0.172 |
Manapal/WT (break) | 0.86819 | 1 |
Manapal/WT (red) | 0.59789 | 0.181 |
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