Expression of 1-1-4.1.1.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.29680.646
27DAP/17DAP1.190270.845
39DAP/27DAP2.43750.064
41DAP/39DAP1.036630.849
42DAP/41DAP1.461360.441
43DAP/42DAP0.802260.409
47DAP/43DAP0.89840.628
52DAP/47DAP1.140070.876
57DAP/52DAP1.20250.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.578330.024
17DAP/reference0.643430.009
27DAP/reference0.991120.683
39DAP/reference0.761250.021
41DAP/reference0.539660.01
42DAP/reference0.86460.046
43DAP/reference0.900640.018
47DAP/reference1.0070.535
52DAP/reference1.457290.048
57DAP/reference1.626290.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.170230.455
27DAP/17DAP1.064630.863
39DAP/27DAP1.506220.079
41DAP/39DAP0.773710.209
42DAP/41DAP1.061070.935
43DAP/42DAP1.186960.086
47DAP/43DAP1.068940.641
52DAP/47DAP1.389610.39
57DAP/52DAP1.665940.047
57DAP/7DAP1.572911

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.033841
17DAP/reference0.969840.447
27DAP/reference0.953260.348
39DAP/reference1.088390.634
41DAP/reference0.998550.709
42DAP/reference0.991920.641
43DAP/reference0.875450.082
47DAP/reference1.116710.353
52DAP/reference1.059650.781
57DAP/reference0.827250.059

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.79970.119
17DAP/reference0.654820.006
27DAP/reference0.932930.292
39DAP/reference1.084520.316
41DAP/reference1.113810.241
42DAP/reference0.978890.261
43DAP/reference0.794660.121
47DAP/reference0.877480.03
52DAP/reference1.108350.085
57DAP/reference0.935280.361

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.927150.311
17DAP/reference0.950040.519
27DAP/reference0.834480.043
39DAP/reference0.936610.328
41DAP/reference1.043110.889
42DAP/reference1.163450.635
43DAP/reference1.033760.858
47DAP/reference0.856960.259
52DAP/reference0.867340.238
57DAP/reference2.182550.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.028931
26DAP/20DAP1.256610.524
34DAP/26DAP1.245890.819
51DAP/34DAP2.163040.059
52DAP/51DAP0.879941
53DAP/52DAP1.197520.428
55DAP/53DAP0.712270.023
57DAP/55DAP0.691460.071
62DAP/57DAP1.406310.004
68DAP/62DAP4.937470.36
68DAP/14DAP6.312070.016

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.828720.198

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.406250.058
Mature Green Tomato/Ripe Tomato0.466250.04
Immature Eggplant/Mature Eggplant1.793930.05
Ripe Pepper/Ripe Tomato1.74777
Mature Eggplant/Ripe Tomato1.296251

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.64308
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M822.040580.467
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.830170.243
IL2-6/WTpooled1.103070.788
IL7-5/WTpooled0.552341
IL7-3/WTpooled1.179781
IL12-4/WTpooled1.105710.737
IL1-4/WTpooled0.982920.834
WT/WTpooled1.087451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.490090.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.039211
DC3000/delta hrp 6h0.965670.95
DC3000/delta hrp 12h1.066321
DC3000/delta hrp 24h0.859590.22

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.989461
DC3000 delta B/DC3000 delta AB1.217330.282

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.00191
Exp 36h1.52410.409
Exp 60h1.51210.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010151
Var 0h1.28470.98
Var 12h I row2-row10.833950.565
Var 12h NI row2-row11.322550.649
Var 36h I row2-row11.113461
Var 36h NI row2-row10.889910.706
Var 60h I row2-row10.515830.292
Var 60h NI row2-row10.837650.756
Time course 0hI-0hNI0.968930.858
Time course 12hI-12hNI1.06150.747
Time course 36hI-36hNI1.77940.005
Time course 60hI-60hNI5.386650.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.807520.255
transgenic ySAMdc/azygous control (breaker)0.911060.251
transgenic ySAMdc/azygous control (red)1.079420.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.930340.057

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.111820.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.01081
Manapal/WT (break)1.406540.381
Manapal/WT (red)1.055210.728