Expression of 1-1-4.1.1.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01035 | 0.997 |
27DAP/17DAP | 1.11766 | 0.857 |
39DAP/27DAP | 1.01659 | 0.857 |
41DAP/39DAP | 1.0036 | 1 |
42DAP/41DAP | 1.01017 | 1 |
43DAP/42DAP | 1.0001 | 0.937 |
47DAP/43DAP | 1.09618 | 0.201 |
52DAP/47DAP | 0.94463 | 0.821 |
57DAP/52DAP | 1.05189 | 0.955 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1284 | 0.252 |
17DAP/reference | 1.07945 | 0.108 |
27DAP/reference | 0.98912 | 0.725 |
39DAP/reference | 1.04089 | 0.191 |
41DAP/reference | 1.10505 | 0.043 |
42DAP/reference | 1.12583 | 0.058 |
43DAP/reference | 1.16627 | 0.014 |
47DAP/reference | 1.11037 | 0.379 |
52DAP/reference | 0.98605 | 0.58 |
57DAP/reference | 1.05957 | 0.744 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97616 | 0.716 |
27DAP/17DAP | 0.84949 | 0.187 |
39DAP/27DAP | 1.02551 | 0.742 |
41DAP/39DAP | 1.01209 | 0.914 |
42DAP/41DAP | 1.09582 | 0.166 |
43DAP/42DAP | 1.04889 | 0.162 |
47DAP/43DAP | 1.02967 | 0.88 |
52DAP/47DAP | 0.9379 | 0.572 |
57DAP/52DAP | 0.99158 | 0.841 |
57DAP/7DAP | 0.96768 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88143 | 0.129 |
17DAP/reference | 0.83942 | 0.031 |
27DAP/reference | 0.93098 | 0.231 |
39DAP/reference | 0.86279 | 0.083 |
41DAP/reference | 0.92311 | 0.203 |
42DAP/reference | 0.8813 | 0.123 |
43DAP/reference | 0.88521 | 0.192 |
47DAP/reference | 0.89766 | 0.383 |
52DAP/reference | 0.94892 | 0.363 |
57DAP/reference | 0.82914 | 0.057 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20018 | 0.241 |
17DAP/reference | 1.25358 | 0.018 |
27DAP/reference | 1.1655 | 0.136 |
39DAP/reference | 1.14575 | 0.3 |
41DAP/reference | 1.15768 | 0.142 |
42DAP/reference | 1.11997 | 0.084 |
43DAP/reference | 1.39354 | 0.014 |
47DAP/reference | 1.12804 | 0.013 |
52DAP/reference | 1.22704 | 0.01 |
57DAP/reference | 1.64553 | 0.019 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96883 | 0.526 |
17DAP/reference | 1.12177 | 0.191 |
27DAP/reference | 0.89462 | 0.257 |
39DAP/reference | 0.82901 | 0.035 |
41DAP/reference | 1.00979 | 0.754 |
42DAP/reference | 0.83264 | 0.134 |
43DAP/reference | 0.78479 | 0.073 |
47DAP/reference | 1.06927 | 0.405 |
52DAP/reference | 1.01054 | 0.821 |
57DAP/reference | 1.01593 | 0.765 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08603 | 0.945 |
26DAP/20DAP | 0.97915 | 1 |
34DAP/26DAP | 1.12333 | 0.819 |
51DAP/34DAP | 0.904 | 0.492 |
52DAP/51DAP | 0.98246 | 1 |
53DAP/52DAP | 1.00844 | 1 |
55DAP/53DAP | 0.97703 | 0.709 |
57DAP/55DAP | 0.92647 | 0.744 |
62DAP/57DAP | 1.09773 | |
68DAP/62DAP | 0.97066 | 0.81 |
68DAP/14DAP | 0.83876 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.90413 | 0.102 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.58842 | |
Mature Green Tomato/Ripe Tomato | 1.08419 | 0.814 |
Immature Eggplant/Mature Eggplant | 1.6 | 0.088 |
Ripe Pepper/Ripe Tomato | 0.81061 | 1 |
Mature Eggplant/Ripe Tomato | 0.48305 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.05438 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.88752 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.89658 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.31249 | |
4-3-2/M82 | 1.04384 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.02724 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.93942 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.77652 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.79622 | 0.65 |
IL7-3/WTpooled | 0.95521 | 1 |
IL12-4/WTpooled | 1.02991 | 1 |
IL1-4/WTpooled | 1.22277 | 1 |
WT/WTpooled | 0.89325 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16257 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 0.95341 | 0.95 |
DC3000/delta hrp 12h | 1.05263 | 1 |
DC3000/delta hrp 24h | 2.91922 | 0.025 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21833 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.09608 | 0.336 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.00619 | 1 |
Exp 60h | 1.0391 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99389 | 1 |
Var 0h | 1.1789 | 1 |
Var 12h I row2-row1 | 1.03588 | 0.795 |
Var 12h NI row2-row1 | 0.90157 | 0.546 |
Var 36h I row2-row1 | 1.05569 | 0.908 |
Var 36h NI row2-row1 | 1.06452 | 1 |
Var 60h I row2-row1 | 1.11505 | 0.562 |
Var 60h NI row2-row1 | 0.94451 | 0.977 |
Time course 0hI-0hNI | 0.96659 | 0.808 |
Time course 12hI-12hNI | 1.03592 | 0.682 |
Time course 36hI-36hNI | 0.98024 | 0.269 |
Time course 60hI-60hNI | 0.95779 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9777 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 0.98036 | 1 |
transgenic ySAMdc/azygous control (red) | 0.83027 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04914 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.18808 | 0.227 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.19736 | 0.083 |
Manapal/WT (break) | 1.10417 | 0.381 |
Manapal/WT (red) | 1.06405 | 1 |
|
|