Expression of 1-1-4.1.1.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.010350.997
27DAP/17DAP1.117660.857
39DAP/27DAP1.016590.857
41DAP/39DAP1.00361
42DAP/41DAP1.010171
43DAP/42DAP1.00010.937
47DAP/43DAP1.096180.201
52DAP/47DAP0.944630.821
57DAP/52DAP1.051890.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.12840.252
17DAP/reference1.079450.108
27DAP/reference0.989120.725
39DAP/reference1.040890.191
41DAP/reference1.105050.043
42DAP/reference1.125830.058
43DAP/reference1.166270.014
47DAP/reference1.110370.379
52DAP/reference0.986050.58
57DAP/reference1.059570.744

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976160.716
27DAP/17DAP0.849490.187
39DAP/27DAP1.025510.742
41DAP/39DAP1.012090.914
42DAP/41DAP1.095820.166
43DAP/42DAP1.048890.162
47DAP/43DAP1.029670.88
52DAP/47DAP0.93790.572
57DAP/52DAP0.991580.841
57DAP/7DAP0.967681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.881430.129
17DAP/reference0.839420.031
27DAP/reference0.930980.231
39DAP/reference0.862790.083
41DAP/reference0.923110.203
42DAP/reference0.88130.123
43DAP/reference0.885210.192
47DAP/reference0.897660.383
52DAP/reference0.948920.363
57DAP/reference0.829140.057

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.200180.241
17DAP/reference1.253580.018
27DAP/reference1.16550.136
39DAP/reference1.145750.3
41DAP/reference1.157680.142
42DAP/reference1.119970.084
43DAP/reference1.393540.014
47DAP/reference1.128040.013
52DAP/reference1.227040.01
57DAP/reference1.645530.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968830.526
17DAP/reference1.121770.191
27DAP/reference0.894620.257
39DAP/reference0.829010.035
41DAP/reference1.009790.754
42DAP/reference0.832640.134
43DAP/reference0.784790.073
47DAP/reference1.069270.405
52DAP/reference1.010540.821
57DAP/reference1.015930.765

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.086030.945
26DAP/20DAP0.979151
34DAP/26DAP1.123330.819
51DAP/34DAP0.9040.492
52DAP/51DAP0.982461
53DAP/52DAP1.008441
55DAP/53DAP0.977030.709
57DAP/55DAP0.926470.744
62DAP/57DAP1.09773
68DAP/62DAP0.970660.81
68DAP/14DAP0.838760.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.904130.102

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.58842
Mature Green Tomato/Ripe Tomato1.084190.814
Immature Eggplant/Mature Eggplant1.60.088
Ripe Pepper/Ripe Tomato0.810611
Mature Eggplant/Ripe Tomato0.48305

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.05438
12-2/M82N/AN/A
12-4/M820.88752
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.896581
4-1-1/M82N/AN/A
4-1/M820.31249
4-3-2/M821.043841
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.02724
7-2/M82N/AN/A
9-3-2/M820.939420.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.776521
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.796220.65
IL7-3/WTpooled0.955211
IL12-4/WTpooled1.029911
IL1-4/WTpooled1.222771
WT/WTpooled0.893251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.162570.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h0.953410.95
DC3000/delta hrp 12h1.052631
DC3000/delta hrp 24h2.919220.025

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.218330.042
DC3000 delta B/DC3000 delta AB1.096080.336

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.006191
Exp 60h1.03911

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993891
Var 0h1.17891
Var 12h I row2-row11.035880.795
Var 12h NI row2-row10.901570.546
Var 36h I row2-row11.055690.908
Var 36h NI row2-row11.064521
Var 60h I row2-row11.115050.562
Var 60h NI row2-row10.944510.977
Time course 0hI-0hNI0.966590.808
Time course 12hI-12hNI1.035920.682
Time course 36hI-36hNI0.980240.269
Time course 60hI-60hNI0.957790.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.97770.662
transgenic ySAMdc/azygous control (breaker)0.980361
transgenic ySAMdc/azygous control (red)0.830271

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.049140.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.188080.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.197360.083
Manapal/WT (break)1.104170.381
Manapal/WT (red)1.064051