Expression of 1-1-4.1.10.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.578840.017
27DAP/17DAP0.845380.593
39DAP/27DAP1.203991
41DAP/39DAP0.948640.726
42DAP/41DAP0.764520.774
43DAP/42DAP1.054951
47DAP/43DAP0.776930.321
52DAP/47DAP0.81770.53
57DAP/52DAP1.049510.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.519290.007
17DAP/reference0.867620.129
27DAP/reference0.833390.027
39DAP/reference0.97570.68
41DAP/reference0.889850.267
42DAP/reference0.886130.043
43DAP/reference0.886510.302
47DAP/reference0.903520.083
52DAP/reference0.648710.013
57DAP/reference0.766590.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.738520.057
27DAP/17DAP0.947490.475
39DAP/27DAP0.996151
41DAP/39DAP1.112970.705
42DAP/41DAP1.14160.225
43DAP/42DAP0.865140.065
47DAP/43DAP1.048290.641
52DAP/47DAP1.013121
57DAP/52DAP0.836810.239
57DAP/7DAP0.77581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.498540.028
17DAP/reference1.102170.162
27DAP/reference0.973940.231
39DAP/reference1.035740.909
41DAP/reference1.132670.325
42DAP/reference0.864590.055
43DAP/reference0.909960.192
47DAP/reference0.990351
52DAP/reference0.822310.028
57DAP/reference0.845420.05

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.442670.058
17DAP/reference0.941420.239
27DAP/reference0.900560.203
39DAP/reference0.771370.011
41DAP/reference0.819130.029
42DAP/reference0.842570.016
43DAP/reference0.730930.012
47DAP/reference0.871130.027
52DAP/reference0.760370.004
57DAP/reference0.818740.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.50870.019
17DAP/reference1.090690.641
27DAP/reference1.102090.467
39DAP/reference1.297360.015
41DAP/reference1.050120.439
42DAP/reference0.932090.134
43DAP/reference0.913810.334
47DAP/reference0.807340.026
52DAP/reference0.974380.675
57DAP/reference0.740170.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.933471
26DAP/20DAP1.82330.099
34DAP/26DAP0.667890.077
51DAP/34DAP0.885510.579
52DAP/51DAP1.026260.904
53DAP/52DAP1.056290.895
55DAP/53DAP0.893760.376
57DAP/55DAP1.000180.872
62DAP/57DAP0.923180.871
68DAP/62DAP1.051010.926
68DAP/14DAP0.851990.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.118070.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.748120.212
Mature Green Tomato/Ripe Tomato12.73810.149
Immature Eggplant/Mature Eggplant0.447620.062
Ripe Pepper/Ripe Tomato3.257960.256
Mature Eggplant/Ripe Tomato2.159570.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.953360.638
1-1-2/M820.89804
12-2/M821.131021
12-4/M820.918491
1-3/M821.020641
2-1-1/M820.993341
2-1/M820.974451
2-6/M821.048441
3-2/M821.00758
4-1-1/M821.053691
4-1/M821.04865
4-3-2/M820.951820.698
4-3/M821.156741
5-3/M821.048991
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.321510.992
7-2/M821.113821
9-3-2/M820.6151

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.884610.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.951661
DC3000/delta hrp 6h1.128081
DC3000/delta hrp 12h0.874361
DC3000/delta hrp 24h1.280780.113

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.978921
DC3000 delta B/DC3000 delta AB0.864110.069

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.091581
Exp 36h0.963850.943
Exp 60h1.002621

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993281
Var 0h1.024651
Var 12h I row2-row10.908410.363
Var 12h NI row2-row10.973170.906
Var 36h I row2-row10.980641
Var 36h NI row2-row11.056171
Var 60h I row2-row11.049561
Var 60h NI row2-row10.996941
Time course 0hI-0hNI1.082710.799
Time course 12hI-12hNI0.973090.841
Time course 36hI-36hNI1.146870.316
Time course 60hI-60hNI0.384030.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.943380.377
transgenic ySAMdc/azygous control (breaker)1.231870.248
transgenic ySAMdc/azygous control (red)1.060741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.965740.168

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.300090.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.368490.086
Manapal/WT (break)0.705570.333
Manapal/WT (red)1.228590.222