Expression of 1-1-4.1.10.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.57884 | 0.017 |
27DAP/17DAP | 0.84538 | 0.593 |
39DAP/27DAP | 1.20399 | 1 |
41DAP/39DAP | 0.94864 | 0.726 |
42DAP/41DAP | 0.76452 | 0.774 |
43DAP/42DAP | 1.05495 | 1 |
47DAP/43DAP | 0.77693 | 0.321 |
52DAP/47DAP | 0.8177 | 0.53 |
57DAP/52DAP | 1.04951 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.51929 | 0.007 |
17DAP/reference | 0.86762 | 0.129 |
27DAP/reference | 0.83339 | 0.027 |
39DAP/reference | 0.9757 | 0.68 |
41DAP/reference | 0.88985 | 0.267 |
42DAP/reference | 0.88613 | 0.043 |
43DAP/reference | 0.88651 | 0.302 |
47DAP/reference | 0.90352 | 0.083 |
52DAP/reference | 0.64871 | 0.013 |
57DAP/reference | 0.76659 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.73852 | 0.057 |
27DAP/17DAP | 0.94749 | 0.475 |
39DAP/27DAP | 0.99615 | 1 |
41DAP/39DAP | 1.11297 | 0.705 |
42DAP/41DAP | 1.1416 | 0.225 |
43DAP/42DAP | 0.86514 | 0.065 |
47DAP/43DAP | 1.04829 | 0.641 |
52DAP/47DAP | 1.01312 | 1 |
57DAP/52DAP | 0.83681 | 0.239 |
57DAP/7DAP | 0.7758 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.49854 | 0.028 |
17DAP/reference | 1.10217 | 0.162 |
27DAP/reference | 0.97394 | 0.231 |
39DAP/reference | 1.03574 | 0.909 |
41DAP/reference | 1.13267 | 0.325 |
42DAP/reference | 0.86459 | 0.055 |
43DAP/reference | 0.90996 | 0.192 |
47DAP/reference | 0.99035 | 1 |
52DAP/reference | 0.82231 | 0.028 |
57DAP/reference | 0.84542 | 0.05 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44267 | 0.058 |
17DAP/reference | 0.94142 | 0.239 |
27DAP/reference | 0.90056 | 0.203 |
39DAP/reference | 0.77137 | 0.011 |
41DAP/reference | 0.81913 | 0.029 |
42DAP/reference | 0.84257 | 0.016 |
43DAP/reference | 0.73093 | 0.012 |
47DAP/reference | 0.87113 | 0.027 |
52DAP/reference | 0.76037 | 0.004 |
57DAP/reference | 0.81874 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.5087 | 0.019 |
17DAP/reference | 1.09069 | 0.641 |
27DAP/reference | 1.10209 | 0.467 |
39DAP/reference | 1.29736 | 0.015 |
41DAP/reference | 1.05012 | 0.439 |
42DAP/reference | 0.93209 | 0.134 |
43DAP/reference | 0.91381 | 0.334 |
47DAP/reference | 0.80734 | 0.026 |
52DAP/reference | 0.97438 | 0.675 |
57DAP/reference | 0.74017 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93347 | 1 |
26DAP/20DAP | 1.8233 | 0.099 |
34DAP/26DAP | 0.66789 | 0.077 |
51DAP/34DAP | 0.88551 | 0.579 |
52DAP/51DAP | 1.02626 | 0.904 |
53DAP/52DAP | 1.05629 | 0.895 |
55DAP/53DAP | 0.89376 | 0.376 |
57DAP/55DAP | 1.00018 | 0.872 |
62DAP/57DAP | 0.92318 | 0.871 |
68DAP/62DAP | 1.05101 | 0.926 |
68DAP/14DAP | 0.85199 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11807 | 0.326 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.74812 | 0.212 |
Mature Green Tomato/Ripe Tomato | 12.7381 | 0.149 |
Immature Eggplant/Mature Eggplant | 0.44762 | 0.062 |
Ripe Pepper/Ripe Tomato | 3.25796 | 0.256 |
Mature Eggplant/Ripe Tomato | 2.15957 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95336 | 0.638 |
1-1-2/M82 | 0.89804 | |
12-2/M82 | 1.13102 | 1 |
12-4/M82 | 0.91849 | 1 |
1-3/M82 | 1.02064 | 1 |
2-1-1/M82 | 0.99334 | 1 |
2-1/M82 | 0.97445 | 1 |
2-6/M82 | 1.04844 | 1 |
3-2/M82 | 1.00758 | |
4-1-1/M82 | 1.05369 | 1 |
4-1/M82 | 1.04865 | |
4-3-2/M82 | 0.95182 | 0.698 |
4-3/M82 | 1.15674 | 1 |
5-3/M82 | 1.04899 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.32151 | 0.992 |
7-2/M82 | 1.11382 | 1 |
9-3-2/M82 | 0.6151 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88461 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95166 | 1 |
DC3000/delta hrp 6h | 1.12808 | 1 |
DC3000/delta hrp 12h | 0.87436 | 1 |
DC3000/delta hrp 24h | 1.28078 | 0.113 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.97892 | 1 |
DC3000 delta B/DC3000 delta AB | 0.86411 | 0.069 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09158 | 1 |
Exp 36h | 0.96385 | 0.943 |
Exp 60h | 1.00262 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99328 | 1 |
Var 0h | 1.02465 | 1 |
Var 12h I row2-row1 | 0.90841 | 0.363 |
Var 12h NI row2-row1 | 0.97317 | 0.906 |
Var 36h I row2-row1 | 0.98064 | 1 |
Var 36h NI row2-row1 | 1.05617 | 1 |
Var 60h I row2-row1 | 1.04956 | 1 |
Var 60h NI row2-row1 | 0.99694 | 1 |
Time course 0hI-0hNI | 1.08271 | 0.799 |
Time course 12hI-12hNI | 0.97309 | 0.841 |
Time course 36hI-36hNI | 1.14687 | 0.316 |
Time course 60hI-60hNI | 0.38403 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94338 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 1.23187 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.06074 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96574 | 0.168 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.30009 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.36849 | 0.086 |
Manapal/WT (break) | 0.70557 | 0.333 |
Manapal/WT (red) | 1.22859 | 0.222 |
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