Expression of 1-1-4.1.11.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09401 | 0.786 |
27DAP/17DAP | 1.18131 | 0.89 |
39DAP/27DAP | 1.01102 | 0.769 |
41DAP/39DAP | 1.38167 | 0.162 |
42DAP/41DAP | 1.21401 | 0.992 |
43DAP/42DAP | 0.90686 | 0.813 |
47DAP/43DAP | 1.02338 | 1 |
52DAP/47DAP | 1.36842 | 0.398 |
57DAP/52DAP | 0.92265 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94328 | 0.308 |
17DAP/reference | 1.09886 | 0.064 |
27DAP/reference | 1.03496 | 0.759 |
39DAP/reference | 1.09992 | 0.074 |
41DAP/reference | 1.00631 | 1 |
42DAP/reference | 0.89954 | 0.091 |
43DAP/reference | 1.09194 | 0.175 |
47DAP/reference | 0.89465 | 0.035 |
52DAP/reference | 0.81331 | 0.139 |
57DAP/reference | 0.82309 | 0.039 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07939 | 0.749 |
27DAP/17DAP | 0.99327 | 0.943 |
39DAP/27DAP | 1.09928 | 0.623 |
41DAP/39DAP | 1.01947 | 1 |
42DAP/41DAP | 1.00714 | 0.929 |
43DAP/42DAP | 1.11816 | 0.446 |
47DAP/43DAP | 0.98358 | 0.93 |
52DAP/47DAP | 0.9688 | 0.898 |
57DAP/52DAP | 0.94112 | 0.43 |
57DAP/7DAP | 1.24499 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89689 | 0.203 |
17DAP/reference | 0.90144 | 0.039 |
27DAP/reference | 0.91984 | 0.01 |
39DAP/reference | 0.84701 | 0.011 |
41DAP/reference | 0.87098 | 0.06 |
42DAP/reference | 0.8409 | 0.013 |
43DAP/reference | 0.83703 | 0.016 |
47DAP/reference | 0.87163 | 0.05 |
52DAP/reference | 0.82131 | 0.043 |
57DAP/reference | 0.80188 | 0.019 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02679 | 0.852 |
17DAP/reference | 1.03722 | 0.979 |
27DAP/reference | 0.7856 | 0.076 |
39DAP/reference | 0.77314 | 0.087 |
41DAP/reference | 0.84445 | 0.148 |
42DAP/reference | 0.93761 | 0.321 |
43DAP/reference | 1.10442 | 0.435 |
47DAP/reference | 0.9881 | 0.609 |
52DAP/reference | 0.97198 | 0.38 |
57DAP/reference | 1.15343 | 0.314 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89781 | 0.037 |
17DAP/reference | 1.0208 | 0.842 |
27DAP/reference | 0.9054 | 0.044 |
39DAP/reference | 0.89235 | 0.026 |
41DAP/reference | 0.86321 | 0.019 |
42DAP/reference | 0.86198 | 0.361 |
43DAP/reference | 0.7652 | 0.102 |
47DAP/reference | 1.11839 | 0.501 |
52DAP/reference | 0.94848 | 0.472 |
57DAP/reference | 0.50213 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91058 | 0.787 |
26DAP/20DAP | 0.85151 | 0.512 |
34DAP/26DAP | 1.04311 | 1 |
51DAP/34DAP | 0.89923 | 0.458 |
52DAP/51DAP | 1.10433 | 0.51 |
53DAP/52DAP | 1.19238 | 0.458 |
55DAP/53DAP | 1.01915 | 0.922 |
57DAP/55DAP | 0.89591 | 0.59 |
62DAP/57DAP | 1.23035 | 0.04 |
68DAP/62DAP | 0.88194 | 0.429 |
68DAP/14DAP | 0.88873 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91403 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.8931 | 0.569 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97754 | 0.961 |
1-1-2/M82 | 0.89255 | 0.958 |
12-2/M82 | 1.02804 | 1 |
12-4/M82 | 0.94237 | 1 |
1-3/M82 | 0.75042 | 0.378 |
2-1-1/M82 | 0.80941 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.17761 | 0.452 |
3-2/M82 | 1.0003 | |
4-1-1/M82 | 1.09368 | 1 |
4-1/M82 | 0.64373 | 1 |
4-3-2/M82 | 1.02328 | 1 |
4-3/M82 | 0.88631 | 0.72 |
5-3/M82 | 0.91345 | 0.419 |
6-2/M82 | 0.78444 | |
6-3/M82 | 1.04022 | 1 |
7-1/M82 | 1.01807 | 1 |
7-2/M82 | 1.00873 | 1 |
9-3-2/M82 | 0.80188 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.20209 | 0.419 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.95891 | 0.294 |
IL12-4/WTpooled | 0.93163 | 0.581 |
IL1-4/WTpooled | 1.21877 | 1 |
WT/WTpooled | 0.92019 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.83327 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00266 | 1 |
DC3000/delta hrp 6h | 0.94311 | 0.95 |
DC3000/delta hrp 12h | 1.51384 | 1 |
DC3000/delta hrp 24h | 1.08105 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.39401 | |
DC3000 delta B/DC3000 delta AB | 1.03239 | 0.625 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98311 | 1 |
Var 0h | 1.1319 | 1 |
Var 12h I row2-row1 | 1.05561 | 0.272 |
Var 12h NI row2-row1 | 0.97461 | 0.906 |
Var 36h I row2-row1 | 0.76769 | 0.805 |
Var 36h NI row2-row1 | 1.13391 | 1 |
Var 60h I row2-row1 | 1.39791 | 1 |
Var 60h NI row2-row1 | 1.1322 | 0.904 |
Time course 0hI-0hNI | 1.13483 | 0.323 |
Time course 12hI-12hNI | 0.94823 | 0.522 |
Time course 36hI-36hNI | 0.98257 | 0.601 |
Time course 60hI-60hNI | 0.84632 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8588 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 1.20536 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.16709 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00885 | 0.656 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.55535 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.66651 | 0.105 |
Manapal/WT (break) | 1.16371 | 0.381 |
Manapal/WT (red) | 1.40478 | 0.15 |
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