Expression of 1-1-4.1.11.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.094010.786
27DAP/17DAP1.181310.89
39DAP/27DAP1.011020.769
41DAP/39DAP1.381670.162
42DAP/41DAP1.214010.992
43DAP/42DAP0.906860.813
47DAP/43DAP1.023381
52DAP/47DAP1.368420.398
57DAP/52DAP0.922650.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.943280.308
17DAP/reference1.098860.064
27DAP/reference1.034960.759
39DAP/reference1.099920.074
41DAP/reference1.006311
42DAP/reference0.899540.091
43DAP/reference1.091940.175
47DAP/reference0.894650.035
52DAP/reference0.813310.139
57DAP/reference0.823090.039

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.079390.749
27DAP/17DAP0.993270.943
39DAP/27DAP1.099280.623
41DAP/39DAP1.019471
42DAP/41DAP1.007140.929
43DAP/42DAP1.118160.446
47DAP/43DAP0.983580.93
52DAP/47DAP0.96880.898
57DAP/52DAP0.941120.43
57DAP/7DAP1.244991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.896890.203
17DAP/reference0.901440.039
27DAP/reference0.919840.01
39DAP/reference0.847010.011
41DAP/reference0.870980.06
42DAP/reference0.84090.013
43DAP/reference0.837030.016
47DAP/reference0.871630.05
52DAP/reference0.821310.043
57DAP/reference0.801880.019

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.026790.852
17DAP/reference1.037220.979
27DAP/reference0.78560.076
39DAP/reference0.773140.087
41DAP/reference0.844450.148
42DAP/reference0.937610.321
43DAP/reference1.104420.435
47DAP/reference0.98810.609
52DAP/reference0.971980.38
57DAP/reference1.153430.314

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897810.037
17DAP/reference1.02080.842
27DAP/reference0.90540.044
39DAP/reference0.892350.026
41DAP/reference0.863210.019
42DAP/reference0.861980.361
43DAP/reference0.76520.102
47DAP/reference1.118390.501
52DAP/reference0.948480.472
57DAP/reference0.502130.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.910580.787
26DAP/20DAP0.851510.512
34DAP/26DAP1.043111
51DAP/34DAP0.899230.458
52DAP/51DAP1.104330.51
53DAP/52DAP1.192380.458
55DAP/53DAP1.019150.922
57DAP/55DAP0.895910.59
62DAP/57DAP1.230350.04
68DAP/62DAP0.881940.429
68DAP/14DAP0.888731

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.914030.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.89310.569
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.977540.961
1-1-2/M820.892550.958
12-2/M821.028041
12-4/M820.942371
1-3/M820.750420.378
2-1-1/M820.80941
2-1/M82N/AN/A
2-6/M821.177610.452
3-2/M821.0003
4-1-1/M821.093681
4-1/M820.643731
4-3-2/M821.023281
4-3/M820.886310.72
5-3/M820.913450.419
6-2/M820.78444
6-3/M821.040221
7-1/M821.018071
7-2/M821.008731
9-3-2/M820.801880.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.202090.419
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.958910.294
IL12-4/WTpooled0.931630.581
IL1-4/WTpooled1.218771
WT/WTpooled0.920191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.833270.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.002661
DC3000/delta hrp 6h0.943110.95
DC3000/delta hrp 12h1.513841
DC3000/delta hrp 24h1.081050.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.39401
DC3000 delta B/DC3000 delta AB1.032390.625

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983111
Var 0h1.13191
Var 12h I row2-row11.055610.272
Var 12h NI row2-row10.974610.906
Var 36h I row2-row10.767690.805
Var 36h NI row2-row11.133911
Var 60h I row2-row11.397911
Var 60h NI row2-row11.13220.904
Time course 0hI-0hNI1.134830.323
Time course 12hI-12hNI0.948230.522
Time course 36hI-36hNI0.982570.601
Time course 60hI-60hNI0.846320.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.85880.409
transgenic ySAMdc/azygous control (breaker)1.205360.248
transgenic ySAMdc/azygous control (red)1.167090.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.008850.656

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.555350.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.666510.105
Manapal/WT (break)1.163710.381
Manapal/WT (red)1.404780.15