Expression of 1-1-4.1.12.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05077 | 0.851 |
27DAP/17DAP | 1.17506 | 0.833 |
39DAP/27DAP | 1.08075 | 0.933 |
41DAP/39DAP | 0.98828 | 0.857 |
42DAP/41DAP | 2.11154 | 0.159 |
43DAP/42DAP | 1.2278 | 0.923 |
47DAP/43DAP | 0.97918 | 0.904 |
52DAP/47DAP | 0.70052 | 0.185 |
57DAP/52DAP | 1.20658 | 0.817 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06236 | 0.522 |
17DAP/reference | 1.04584 | 0.143 |
27DAP/reference | 1.01374 | 0.925 |
39DAP/reference | 1.05553 | 0.377 |
41DAP/reference | 1.16754 | 0.024 |
42DAP/reference | 1.02562 | 0.632 |
43DAP/reference | 1.04358 | 0.471 |
47DAP/reference | 0.95614 | 0.224 |
52DAP/reference | 0.90627 | 0.064 |
57DAP/reference | 0.86194 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.18006 | |
27DAP/17DAP | 0.84825 | 0.878 |
39DAP/27DAP | 3.21205 | 0.308 |
41DAP/39DAP | 0.88769 | 0.98 |
42DAP/41DAP | 0.83082 | 0.473 |
43DAP/42DAP | 0.42176 | 0.022 |
47DAP/43DAP | 2.33132 | 0.969 |
52DAP/47DAP | 2.48926 | 0.097 |
57DAP/52DAP | 10.9526 | 0.378 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89969 | 0.088 |
17DAP/reference | 0.89228 | 0.044 |
27DAP/reference | 0.9367 | 0.325 |
39DAP/reference | 0.89689 | 0.013 |
41DAP/reference | 0.88735 | 0.02 |
42DAP/reference | 0.86895 | 0.011 |
43DAP/reference | 0.89243 | 0.034 |
47DAP/reference | 0.87745 | 0.128 |
52DAP/reference | 0.86766 | 0.038 |
57DAP/reference | 0.87738 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1848 | 0.193 |
17DAP/reference | 1.17903 | 0.139 |
27DAP/reference | 1.07118 | 0.427 |
39DAP/reference | 1.10591 | 0.29 |
41DAP/reference | 0.97789 | 0.472 |
42DAP/reference | 1.01018 | 1 |
43DAP/reference | 1.25982 | 0.043 |
47DAP/reference | 1.03832 | 0.712 |
52DAP/reference | 1.10803 | 0.046 |
57DAP/reference | 1.26318 | 0.14 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97001 | 0.489 |
17DAP/reference | 1.0169 | 0.956 |
27DAP/reference | 0.96585 | 0.516 |
39DAP/reference | 0.95407 | 0.299 |
41DAP/reference | 0.93286 | 0.058 |
42DAP/reference | 0.86077 | 0.049 |
43DAP/reference | 0.9167 | 0.256 |
47DAP/reference | 0.98223 | 0.574 |
52DAP/reference | 0.80219 | 0.118 |
57DAP/reference | 0.69513 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06752 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.93343 | |
51DAP/34DAP | 0.78023 | 0.176 |
52DAP/51DAP | 0.2971 | |
53DAP/52DAP | 1.89158 | |
55DAP/53DAP | 1.92238 | |
57DAP/55DAP | 0.96979 | |
62DAP/57DAP | 0.91465 | 0.994 |
68DAP/62DAP | 0.57728 | 0.042 |
68DAP/14DAP | 1.23781 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.67973 | 0.079 |
Immature Eggplant/Mature Eggplant | 1.3619 | 0.085 |
Ripe Pepper/Ripe Tomato | 0.48382 | |
Mature Eggplant/Ripe Tomato | 3.4553 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96264 | 0.961 |
1-1-2/M82 | 0.85672 | |
12-2/M82 | 1.16738 | 0.421 |
12-4/M82 | 1.28957 | 1 |
1-3/M82 | 0.82638 | 0.378 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.14917 | 0.695 |
3-2/M82 | 0.9985 | 1 |
4-1-1/M82 | 0.94297 | 1 |
4-1/M82 | 1.48449 | 0.853 |
4-3-2/M82 | 1.13053 | 1 |
4-3/M82 | 0.88013 | 0.421 |
5-3/M82 | 0.94536 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.0963 | 1 |
7-1/M82 | 1.04967 | 1 |
7-2/M82 | 0.94487 | 0.881 |
9-3-2/M82 | 0.85941 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.17101 | 0.584 |
IL7-5/WTpooled | 0.51514 | |
IL7-3/WTpooled | 1.08276 | 1 |
IL12-4/WTpooled | 0.92035 | 0.71 |
IL1-4/WTpooled | 1.12316 | 0.426 |
WT/WTpooled | 0.98988 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97979 | 1 |
DC3000/delta hrp 6h | 1.15424 | 1 |
DC3000/delta hrp 12h | 1.07125 | 1 |
DC3000/delta hrp 24h | 1.05488 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03474 | 1 |
Exp 36h | 0.94802 | 0.879 |
Exp 60h | 0.84749 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.0295 | 0.98 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85397 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 0.82662 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.93827 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96376 | 0.242 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.7752 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.68558 | 1 |
Manapal/WT (break) | 0.68624 | 1 |
Manapal/WT (red) | N/A | N/A |
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