Expression of 1-1-4.1.12.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.050770.851
27DAP/17DAP1.175060.833
39DAP/27DAP1.080750.933
41DAP/39DAP0.988280.857
42DAP/41DAP2.111540.159
43DAP/42DAP1.22780.923
47DAP/43DAP0.979180.904
52DAP/47DAP0.700520.185
57DAP/52DAP1.206580.817

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.062360.522
17DAP/reference1.045840.143
27DAP/reference1.013740.925
39DAP/reference1.055530.377
41DAP/reference1.167540.024
42DAP/reference1.025620.632
43DAP/reference1.043580.471
47DAP/reference0.956140.224
52DAP/reference0.906270.064
57DAP/reference0.861940.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.18006
27DAP/17DAP0.848250.878
39DAP/27DAP3.212050.308
41DAP/39DAP0.887690.98
42DAP/41DAP0.830820.473
43DAP/42DAP0.421760.022
47DAP/43DAP2.331320.969
52DAP/47DAP2.489260.097
57DAP/52DAP10.95260.378
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.899690.088
17DAP/reference0.892280.044
27DAP/reference0.93670.325
39DAP/reference0.896890.013
41DAP/reference0.887350.02
42DAP/reference0.868950.011
43DAP/reference0.892430.034
47DAP/reference0.877450.128
52DAP/reference0.867660.038
57DAP/reference0.877380.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.18480.193
17DAP/reference1.179030.139
27DAP/reference1.071180.427
39DAP/reference1.105910.29
41DAP/reference0.977890.472
42DAP/reference1.010181
43DAP/reference1.259820.043
47DAP/reference1.038320.712
52DAP/reference1.108030.046
57DAP/reference1.263180.14

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.970010.489
17DAP/reference1.01690.956
27DAP/reference0.965850.516
39DAP/reference0.954070.299
41DAP/reference0.932860.058
42DAP/reference0.860770.049
43DAP/reference0.91670.256
47DAP/reference0.982230.574
52DAP/reference0.802190.118
57DAP/reference0.695130.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.067521
26DAP/20DAPN/AN/A
34DAP/26DAP0.93343
51DAP/34DAP0.780230.176
52DAP/51DAP0.2971
53DAP/52DAP1.89158
55DAP/53DAP1.92238
57DAP/55DAP0.96979
62DAP/57DAP0.914650.994
68DAP/62DAP0.577280.042
68DAP/14DAP1.237810.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.679730.079
Immature Eggplant/Mature Eggplant1.36190.085
Ripe Pepper/Ripe Tomato0.48382
Mature Eggplant/Ripe Tomato3.45530.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.962640.961
1-1-2/M820.85672
12-2/M821.167380.421
12-4/M821.289571
1-3/M820.826380.378
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.149170.695
3-2/M820.99851
4-1-1/M820.942971
4-1/M821.484490.853
4-3-2/M821.130531
4-3/M820.880130.421
5-3/M820.945361
6-2/M82N/AN/A
6-3/M821.09631
7-1/M821.049671
7-2/M820.944870.881
9-3-2/M820.859410.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.171010.584
IL7-5/WTpooled0.51514
IL7-3/WTpooled1.082761
IL12-4/WTpooled0.920350.71
IL1-4/WTpooled1.123160.426
WT/WTpooled0.989881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.979791
DC3000/delta hrp 6h1.154241
DC3000/delta hrp 12h1.071251
DC3000/delta hrp 24h1.054880.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.034741
Exp 36h0.948020.879
Exp 60h0.847490.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.02950.98
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.853970.362
transgenic ySAMdc/azygous control (breaker)0.826620.173
transgenic ySAMdc/azygous control (red)0.938271

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.963760.242

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.77520.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.685581
Manapal/WT (break)0.686241
Manapal/WT (red)N/AN/A