Expression of 1-1-4.1.12.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.040250.964
27DAP/17DAP0.798030.422
39DAP/27DAP1.339390.796
41DAP/39DAP1.061330.921
42DAP/41DAP1.40920.262
43DAP/42DAP0.821930.627
47DAP/43DAP0.918590.71
52DAP/47DAP0.803770.557
57DAP/52DAP1.331120.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.037641
17DAP/reference1.052150.717
27DAP/reference0.987370.683
39DAP/reference1.008390.941
41DAP/reference1.047310.759
42DAP/reference1.262240.089
43DAP/reference1.23190.287
47DAP/reference1.133950.243
52DAP/reference1.107220.951
57DAP/reference1.209740.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.085320.515
27DAP/17DAP1.137580.976
39DAP/27DAP1.009151
41DAP/39DAP1.210490.753
42DAP/41DAP0.998790.887
43DAP/42DAP0.858760.224
47DAP/43DAP1.209610.396
52DAP/47DAP1.15010.619
57DAP/52DAP1.246420.291
57DAP/7DAP0.777991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.99460.758
17DAP/reference1.052230.18
27DAP/reference0.960930.088
39DAP/reference1.017050.511
41DAP/reference0.907870.023
42DAP/reference0.877630.01
43DAP/reference0.940730.175
47DAP/reference0.976360.671
52DAP/reference0.981790.477
57DAP/reference1.090220.356

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.885420.532
17DAP/reference1.042910.83
27DAP/reference1.057081
39DAP/reference0.97350.509
41DAP/reference1.164760.221
42DAP/reference1.296410.22
43DAP/reference1.213620.149
47DAP/reference1.192140.197
52DAP/reference1.162950.667
57DAP/reference1.375670.182

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.197130.149
17DAP/reference1.09750.467
27DAP/reference1.015610.834
39DAP/reference1.078290.211
41DAP/reference1.008620.984
42DAP/reference1.13710.364
43DAP/reference0.988720.685
47DAP/reference1.174010.04
52DAP/reference1.995330.055
57DAP/reference1.808750.218

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.636231
26DAP/20DAP0.786510.512
34DAP/26DAP1.250081
51DAP/34DAP1.627890.033
52DAP/51DAP1.232480.313
53DAP/52DAP0.873340.514
55DAP/53DAP1.185130.05
57DAP/55DAP0.950780.703
62DAP/57DAP0.990371
68DAP/62DAP1.252110.866
68DAP/14DAP1.057270.636

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.712570.065

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.09111
Mature Eggplant/Ripe Tomato0.908440.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.972340.961
1-1-2/M820.93251
12-2/M821.05451
12-4/M821.000771
1-3/M820.931540.501
2-1-1/M821.038820.764
2-1/M820.937810.74
2-6/M821.099021
3-2/M820.79919
4-1-1/M821.094281
4-1/M821.31362
4-3-2/M821.34202
4-3/M820.952881
5-3/M821.083040.572
6-2/M820.808691
6-3/M820.923510.982
7-1/M820.71806
7-2/M820.849070.553
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.911091
IL2-6/WTpooled1.538330.395
IL7-5/WTpooled1.019751
IL7-3/WTpooled0.752950.31
IL12-4/WTpooled0.722990.543
IL1-4/WTpooled0.895360.699
WT/WTpooled1.063351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.116020.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.013121
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.582321
DC3000/delta hrp 24h1.216240.308

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.7694
DC3000 delta B/DC3000 delta AB1.218950.327

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006791
Var 0h1.246120.782
Var 12h I row2-row10.9140.565
Var 12h NI row2-row10.838950.443
Var 36h I row2-row10.96674
Var 36h NI row2-row11.001111
Var 60h I row2-row10.898990.952
Var 60h NI row2-row11.098260.904
Time course 0hI-0hNI0.968640.795
Time course 12hI-12hNI0.90820.225
Time course 36hI-36hNI0.890350.032
Time course 60hI-60hNI0.744730.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.860580.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.710250.424