Expression of 1-1-4.1.12.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04237 | 0.827 |
27DAP/17DAP | 1.01035 | 1 |
39DAP/27DAP | 0.9876 | 0.782 |
41DAP/39DAP | 0.98514 | 0.911 |
42DAP/41DAP | 1.08097 | 0.899 |
43DAP/42DAP | 0.99295 | 0.937 |
47DAP/43DAP | 1.02742 | 0.999 |
52DAP/47DAP | 0.91791 | 0.746 |
57DAP/52DAP | 1.09981 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09123 | 0.48 |
17DAP/reference | 1.06184 | 0.318 |
27DAP/reference | 1.10825 | 0.17 |
39DAP/reference | 1.14507 | 0.054 |
41DAP/reference | 1.20187 | 0.062 |
42DAP/reference | 1.11604 | 0.103 |
43DAP/reference | 1.06508 | 0.787 |
47DAP/reference | 1.11223 | 0.034 |
52DAP/reference | 1.57466 | 0.008 |
57DAP/reference | 1.15098 | 0.094 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1095 | 0.372 |
27DAP/17DAP | 1.05146 | 0.859 |
39DAP/27DAP | 0.8783 | 0.076 |
41DAP/39DAP | 1.06174 | 0.914 |
42DAP/41DAP | 1.20868 | 0.084 |
43DAP/42DAP | 0.86851 | 0.165 |
47DAP/43DAP | 0.90739 | 0.332 |
52DAP/47DAP | 1.49735 | 0.147 |
57DAP/52DAP | 1.33184 | 0.175 |
57DAP/7DAP | 0.81315 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95533 | 0.361 |
17DAP/reference | 0.98472 | 0.253 |
27DAP/reference | 0.98546 | 0.248 |
39DAP/reference | 0.98515 | 0.264 |
41DAP/reference | 0.92939 | 0.056 |
42DAP/reference | 0.88969 | 0.034 |
43DAP/reference | 0.96223 | 0.421 |
47DAP/reference | 0.90829 | 0.383 |
52DAP/reference | 0.91303 | 0.254 |
57DAP/reference | 0.9329 | 0.109 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09494 | 0.177 |
17DAP/reference | 1.14153 | 0.06 |
27DAP/reference | 1.4417 | 0.039 |
39DAP/reference | 1.43671 | 0.068 |
41DAP/reference | 1.54488 | 0.01 |
42DAP/reference | 1.31287 | 0.032 |
43DAP/reference | 1.09717 | 0.479 |
47DAP/reference | 1.1912 | 0.011 |
52DAP/reference | 1.23892 | 0.018 |
57DAP/reference | 1.1142 | 0.306 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00424 | 1 |
17DAP/reference | 0.98762 | 0.668 |
27DAP/reference | 1.05773 | 0.621 |
39DAP/reference | 1.06885 | 0.466 |
41DAP/reference | 0.96482 | 0.167 |
42DAP/reference | 1.16495 | 0.287 |
43DAP/reference | 1.16885 | 0.343 |
47DAP/reference | 1.13005 | 0.035 |
52DAP/reference | 1.05698 | 0.735 |
57DAP/reference | 1.27929 | 0.072 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.88162 | 0.89 |
26DAP/20DAP | 1.08406 | 0.916 |
34DAP/26DAP | 1.26795 | 1 |
51DAP/34DAP | 1.05804 | 0.96 |
52DAP/51DAP | 2.1866 | 0.033 |
53DAP/52DAP | 0.71852 | |
55DAP/53DAP | 1.42664 | 0.046 |
57DAP/55DAP | 0.74075 | 0.281 |
62DAP/57DAP | 0.98316 | 0.994 |
68DAP/62DAP | 1.50812 | 1 |
68DAP/14DAP | 1.20617 | 0.236 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.47402 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.73077 | 0.221 |
Mature Green Tomato/Ripe Tomato | 1.10099 | 0.209 |
Immature Eggplant/Mature Eggplant | 1.33902 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.00052 | |
Mature Eggplant/Ripe Tomato | 1.245 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07284 | 0.877 |
1-1-2/M82 | 1.03959 | 1 |
12-2/M82 | 1.05689 | 1 |
12-4/M82 | 1.00743 | 1 |
1-3/M82 | 0.95356 | 1 |
2-1-1/M82 | 1.24542 | 0.689 |
2-1/M82 | 1.01218 | 1 |
2-6/M82 | 1.07924 | 0.385 |
3-2/M82 | 1.01234 | 1 |
4-1-1/M82 | 0.95288 | 1 |
4-1/M82 | 1.04044 | 1 |
4-3-2/M82 | 0.91993 | 0.698 |
4-3/M82 | 1.09682 | 1 |
5-3/M82 | 1.01414 | 1 |
6-2/M82 | 1.06566 | 1 |
6-3/M82 | 0.95066 | 1 |
7-1/M82 | 0.90558 | 0.803 |
7-2/M82 | 1.03464 | 1 |
9-3-2/M82 | 1.04268 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.53434 | 0.277 |
IL2-6/WTpooled | 0.99665 | 1 |
IL7-5/WTpooled | 1.3148 | 1 |
IL7-3/WTpooled | 1.08224 | 1 |
IL12-4/WTpooled | 1.00543 | 1 |
IL1-4/WTpooled | 1.12038 | 1 |
WT/WTpooled | 0.88299 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.83214 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97851 | 1 |
DC3000/delta hrp 6h | 1.09716 | |
DC3000/delta hrp 12h | 1.05871 | 1 |
DC3000/delta hrp 24h | 1.04116 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.43994 | 0.043 |
DC3000 delta B/DC3000 delta AB | 1.45333 | 0.141 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.92994 | 0.943 |
Exp 60h | 0.94656 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0063 | 1 |
Var 0h | 1.71897 | 0.98 |
Var 12h I row2-row1 | 0.78793 | 0.565 |
Var 12h NI row2-row1 | 1.0508 | 1 |
Var 36h I row2-row1 | 1.24407 | 0.908 |
Var 36h NI row2-row1 | 1.52619 | 0.276 |
Var 60h I row2-row1 | 0.88946 | 0.582 |
Var 60h NI row2-row1 | 0.97138 | 1 |
Time course 0hI-0hNI | 0.86534 | 0.347 |
Time course 12hI-12hNI | 1.08061 | 0.892 |
Time course 36hI-36hNI | 0.96117 | 0.38 |
Time course 60hI-60hNI | 0.69722 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97411 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 0.83955 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.1525 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91249 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93345 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92856 | 1 |
Manapal/WT (break) | 0.95879 | 1 |
Manapal/WT (red) | 0.79509 | 0.188 |
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