Expression of 1-1-4.1.12.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.042370.827
27DAP/17DAP1.010351
39DAP/27DAP0.98760.782
41DAP/39DAP0.985140.911
42DAP/41DAP1.080970.899
43DAP/42DAP0.992950.937
47DAP/43DAP1.027420.999
52DAP/47DAP0.917910.746
57DAP/52DAP1.099810.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.091230.48
17DAP/reference1.061840.318
27DAP/reference1.108250.17
39DAP/reference1.145070.054
41DAP/reference1.201870.062
42DAP/reference1.116040.103
43DAP/reference1.065080.787
47DAP/reference1.112230.034
52DAP/reference1.574660.008
57DAP/reference1.150980.094

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.10950.372
27DAP/17DAP1.051460.859
39DAP/27DAP0.87830.076
41DAP/39DAP1.061740.914
42DAP/41DAP1.208680.084
43DAP/42DAP0.868510.165
47DAP/43DAP0.907390.332
52DAP/47DAP1.497350.147
57DAP/52DAP1.331840.175
57DAP/7DAP0.813151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.955330.361
17DAP/reference0.984720.253
27DAP/reference0.985460.248
39DAP/reference0.985150.264
41DAP/reference0.929390.056
42DAP/reference0.889690.034
43DAP/reference0.962230.421
47DAP/reference0.908290.383
52DAP/reference0.913030.254
57DAP/reference0.93290.109

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.094940.177
17DAP/reference1.141530.06
27DAP/reference1.44170.039
39DAP/reference1.436710.068
41DAP/reference1.544880.01
42DAP/reference1.312870.032
43DAP/reference1.097170.479
47DAP/reference1.19120.011
52DAP/reference1.238920.018
57DAP/reference1.11420.306

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004241
17DAP/reference0.987620.668
27DAP/reference1.057730.621
39DAP/reference1.068850.466
41DAP/reference0.964820.167
42DAP/reference1.164950.287
43DAP/reference1.168850.343
47DAP/reference1.130050.035
52DAP/reference1.056980.735
57DAP/reference1.279290.072

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.881620.89
26DAP/20DAP1.084060.916
34DAP/26DAP1.267951
51DAP/34DAP1.058040.96
52DAP/51DAP2.18660.033
53DAP/52DAP0.71852
55DAP/53DAP1.426640.046
57DAP/55DAP0.740750.281
62DAP/57DAP0.983160.994
68DAP/62DAP1.508121
68DAP/14DAP1.206170.236

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.474020.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.730770.221
Mature Green Tomato/Ripe Tomato1.100990.209
Immature Eggplant/Mature Eggplant1.339020.05
Ripe Pepper/Ripe Tomato1.00052
Mature Eggplant/Ripe Tomato1.2451

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.072840.877
1-1-2/M821.039591
12-2/M821.056891
12-4/M821.007431
1-3/M820.953561
2-1-1/M821.245420.689
2-1/M821.012181
2-6/M821.079240.385
3-2/M821.012341
4-1-1/M820.952881
4-1/M821.040441
4-3-2/M820.919930.698
4-3/M821.096821
5-3/M821.014141
6-2/M821.065661
6-3/M820.950661
7-1/M820.905580.803
7-2/M821.034641
9-3-2/M821.042681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.534340.277
IL2-6/WTpooled0.996651
IL7-5/WTpooled1.31481
IL7-3/WTpooled1.082241
IL12-4/WTpooled1.005431
IL1-4/WTpooled1.120381
WT/WTpooled0.882991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.832140.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.978511
DC3000/delta hrp 6h1.09716
DC3000/delta hrp 12h1.058711
DC3000/delta hrp 24h1.041160.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.439940.043
DC3000 delta B/DC3000 delta AB1.453330.141

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.929940.943
Exp 60h0.946560.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.00631
Var 0h1.718970.98
Var 12h I row2-row10.787930.565
Var 12h NI row2-row11.05081
Var 36h I row2-row11.244070.908
Var 36h NI row2-row11.526190.276
Var 60h I row2-row10.889460.582
Var 60h NI row2-row10.971381
Time course 0hI-0hNI0.865340.347
Time course 12hI-12hNI1.080610.892
Time course 36hI-36hNI0.961170.38
Time course 60hI-60hNI0.697220.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.974110.662
transgenic ySAMdc/azygous control (breaker)0.839550.15
transgenic ySAMdc/azygous control (red)1.15250.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.912490.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.933450.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.928561
Manapal/WT (break)0.958791
Manapal/WT (red)0.795090.188