Expression of 1-1-4.1.13.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.05030.827
27DAP/17DAP0.99690.939
39DAP/27DAP0.863680.462
41DAP/39DAP1.205880.084
42DAP/41DAP1.132730.882
43DAP/42DAP0.927430.854
47DAP/43DAP1.005510.953
52DAP/47DAP1.150280.736
57DAP/52DAP0.934980.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.969450.371
17DAP/reference1.05870.132
27DAP/reference0.981510.623
39DAP/reference1.035040.229
41DAP/reference0.997911
42DAP/reference0.947290.019
43DAP/reference0.991750.805
47DAP/reference0.935180.005
52DAP/reference0.943530.283
57DAP/reference0.932550.024

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009720.975
27DAP/17DAP0.999721
39DAP/27DAP1.06150.514
41DAP/39DAP1.030841
42DAP/41DAP1.027890.886
43DAP/42DAP0.952240.522
47DAP/43DAP1.002391
52DAP/47DAP1.024960.915
57DAP/52DAP1.006021
57DAP/7DAP1.087450.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.936220.224
17DAP/reference0.953830.016
27DAP/reference0.967630.013
39DAP/reference0.976120.411
41DAP/reference0.97260.259
42DAP/reference1.042860.132
43DAP/reference0.950590.241
47DAP/reference0.909050.033
52DAP/reference0.907030.083
57DAP/reference0.919830.036

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.991050.848
17DAP/reference1.054010.518
27DAP/reference0.953060.352
39DAP/reference0.904860.048
41DAP/reference0.893010.052
42DAP/reference0.960770.355
43DAP/reference1.014711
47DAP/reference0.941910.066
52DAP/reference0.931740.078
57DAP/reference0.990910.72

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.848450.034
17DAP/reference0.93450.268
27DAP/reference1.0360.392
39DAP/reference1.018480.752
41DAP/reference1.002041
42DAP/reference0.923910.22
43DAP/reference0.899040.137
47DAP/reference0.96010.421
52DAP/reference0.940370.464
57DAP/reference0.737370.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.989151
26DAP/20DAP0.953821
34DAP/26DAP0.906380.165
51DAP/34DAP0.95160.64
52DAP/51DAP1.053750.431
53DAP/52DAP0.940310.587
55DAP/53DAP1.000260.925
57DAP/55DAP0.901560.568
62DAP/57DAP1.097160.622
68DAP/62DAP1.079550.747
68DAP/14DAP1.050590.802

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.055120.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.924490.487
Immature Eggplant/Mature Eggplant1.054140.267
Ripe Pepper/Ripe Tomato0.1399
Mature Eggplant/Ripe Tomato0.518520.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.045481
1-1-2/M820.926361
12-2/M821.130561
12-4/M820.959761
1-3/M820.985311
2-1-1/M821.139340.439
2-1/M821.208521
2-6/M820.983961
3-2/M821.022430.967
4-1-1/M821.02621
4-1/M821.04751
4-3-2/M820.976051
4-3/M821.028421
5-3/M820.986161
6-2/M820.998141
6-3/M820.953671
7-1/M821.021821
7-2/M820.970370.881
9-3-2/M820.978581

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.97470.321
IL2-6/WTpooled0.791740.473
IL7-5/WTpooled1.23361
IL7-3/WTpooled0.91881
IL12-4/WTpooled1.1490.839
IL1-4/WTpooled0.837670.699
WT/WTpooled1.039361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.08730.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.915461
DC3000/delta hrp 6h1.183741
DC3000/delta hrp 12h1.101431
DC3000/delta hrp 24h1.030440.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.097630.076
DC3000 delta B/DC3000 delta AB1.042940.528

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988161
Var 0h0.880271
Var 12h I row2-row11.156860.209
Var 12h NI row2-row11.07461
Var 36h I row2-row10.992811
Var 36h NI row2-row10.956840.743
Var 60h I row2-row11.144091
Var 60h NI row2-row10.96231
Time course 0hI-0hNI1.077160.833
Time course 12hI-12hNI1.059330.777
Time course 36hI-36hNI0.967430.533
Time course 60hI-60hNI1.129480.033

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.97790.662
transgenic ySAMdc/azygous control (breaker)0.702230.132
transgenic ySAMdc/azygous control (red)1.129781

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999961

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.141580.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.113251
Manapal/WT (break)1.347790.381
Manapal/WT (red)1.442540.126