Expression of 1-1-4.1.13.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0503 | 0.827 |
27DAP/17DAP | 0.9969 | 0.939 |
39DAP/27DAP | 0.86368 | 0.462 |
41DAP/39DAP | 1.20588 | 0.084 |
42DAP/41DAP | 1.13273 | 0.882 |
43DAP/42DAP | 0.92743 | 0.854 |
47DAP/43DAP | 1.00551 | 0.953 |
52DAP/47DAP | 1.15028 | 0.736 |
57DAP/52DAP | 0.93498 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96945 | 0.371 |
17DAP/reference | 1.0587 | 0.132 |
27DAP/reference | 0.98151 | 0.623 |
39DAP/reference | 1.03504 | 0.229 |
41DAP/reference | 0.99791 | 1 |
42DAP/reference | 0.94729 | 0.019 |
43DAP/reference | 0.99175 | 0.805 |
47DAP/reference | 0.93518 | 0.005 |
52DAP/reference | 0.94353 | 0.283 |
57DAP/reference | 0.93255 | 0.024 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00972 | 0.975 |
27DAP/17DAP | 0.99972 | 1 |
39DAP/27DAP | 1.0615 | 0.514 |
41DAP/39DAP | 1.03084 | 1 |
42DAP/41DAP | 1.02789 | 0.886 |
43DAP/42DAP | 0.95224 | 0.522 |
47DAP/43DAP | 1.00239 | 1 |
52DAP/47DAP | 1.02496 | 0.915 |
57DAP/52DAP | 1.00602 | 1 |
57DAP/7DAP | 1.08745 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93622 | 0.224 |
17DAP/reference | 0.95383 | 0.016 |
27DAP/reference | 0.96763 | 0.013 |
39DAP/reference | 0.97612 | 0.411 |
41DAP/reference | 0.9726 | 0.259 |
42DAP/reference | 1.04286 | 0.132 |
43DAP/reference | 0.95059 | 0.241 |
47DAP/reference | 0.90905 | 0.033 |
52DAP/reference | 0.90703 | 0.083 |
57DAP/reference | 0.91983 | 0.036 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99105 | 0.848 |
17DAP/reference | 1.05401 | 0.518 |
27DAP/reference | 0.95306 | 0.352 |
39DAP/reference | 0.90486 | 0.048 |
41DAP/reference | 0.89301 | 0.052 |
42DAP/reference | 0.96077 | 0.355 |
43DAP/reference | 1.01471 | 1 |
47DAP/reference | 0.94191 | 0.066 |
52DAP/reference | 0.93174 | 0.078 |
57DAP/reference | 0.99091 | 0.72 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84845 | 0.034 |
17DAP/reference | 0.9345 | 0.268 |
27DAP/reference | 1.036 | 0.392 |
39DAP/reference | 1.01848 | 0.752 |
41DAP/reference | 1.00204 | 1 |
42DAP/reference | 0.92391 | 0.22 |
43DAP/reference | 0.89904 | 0.137 |
47DAP/reference | 0.9601 | 0.421 |
52DAP/reference | 0.94037 | 0.464 |
57DAP/reference | 0.73737 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98915 | 1 |
26DAP/20DAP | 0.95382 | 1 |
34DAP/26DAP | 0.90638 | 0.165 |
51DAP/34DAP | 0.9516 | 0.64 |
52DAP/51DAP | 1.05375 | 0.431 |
53DAP/52DAP | 0.94031 | 0.587 |
55DAP/53DAP | 1.00026 | 0.925 |
57DAP/55DAP | 0.90156 | 0.568 |
62DAP/57DAP | 1.09716 | 0.622 |
68DAP/62DAP | 1.07955 | 0.747 |
68DAP/14DAP | 1.05059 | 0.802 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05512 | 0.527 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.92449 | 0.487 |
Immature Eggplant/Mature Eggplant | 1.05414 | 0.267 |
Ripe Pepper/Ripe Tomato | 0.1399 | |
Mature Eggplant/Ripe Tomato | 0.51852 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04548 | 1 |
1-1-2/M82 | 0.92636 | 1 |
12-2/M82 | 1.13056 | 1 |
12-4/M82 | 0.95976 | 1 |
1-3/M82 | 0.98531 | 1 |
2-1-1/M82 | 1.13934 | 0.439 |
2-1/M82 | 1.20852 | 1 |
2-6/M82 | 0.98396 | 1 |
3-2/M82 | 1.02243 | 0.967 |
4-1-1/M82 | 1.0262 | 1 |
4-1/M82 | 1.0475 | 1 |
4-3-2/M82 | 0.97605 | 1 |
4-3/M82 | 1.02842 | 1 |
5-3/M82 | 0.98616 | 1 |
6-2/M82 | 0.99814 | 1 |
6-3/M82 | 0.95367 | 1 |
7-1/M82 | 1.02182 | 1 |
7-2/M82 | 0.97037 | 0.881 |
9-3-2/M82 | 0.97858 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9747 | 0.321 |
IL2-6/WTpooled | 0.79174 | 0.473 |
IL7-5/WTpooled | 1.2336 | 1 |
IL7-3/WTpooled | 0.9188 | 1 |
IL12-4/WTpooled | 1.149 | 0.839 |
IL1-4/WTpooled | 0.83767 | 0.699 |
WT/WTpooled | 1.03936 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0873 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91546 | 1 |
DC3000/delta hrp 6h | 1.18374 | 1 |
DC3000/delta hrp 12h | 1.10143 | 1 |
DC3000/delta hrp 24h | 1.03044 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09763 | 0.076 |
DC3000 delta B/DC3000 delta AB | 1.04294 | 0.528 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98816 | 1 |
Var 0h | 0.88027 | 1 |
Var 12h I row2-row1 | 1.15686 | 0.209 |
Var 12h NI row2-row1 | 1.0746 | 1 |
Var 36h I row2-row1 | 0.99281 | 1 |
Var 36h NI row2-row1 | 0.95684 | 0.743 |
Var 60h I row2-row1 | 1.14409 | 1 |
Var 60h NI row2-row1 | 0.9623 | 1 |
Time course 0hI-0hNI | 1.07716 | 0.833 |
Time course 12hI-12hNI | 1.05933 | 0.777 |
Time course 36hI-36hNI | 0.96743 | 0.533 |
Time course 60hI-60hNI | 1.12948 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9779 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 0.70223 | 0.132 |
transgenic ySAMdc/azygous control (red) | 1.12978 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99996 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.14158 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11325 | 1 |
Manapal/WT (break) | 1.34779 | 0.381 |
Manapal/WT (red) | 1.44254 | 0.126 |
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