Expression of 1-1-4.1.13.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.07980.77
27DAP/17DAP1.274670.785
39DAP/27DAP0.999560.749
41DAP/39DAP1.006750.887
42DAP/41DAP1.011951
43DAP/42DAP1.107660.867
47DAP/43DAP1.205870.576
52DAP/47DAP0.845760.598
57DAP/52DAP1.083330.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.989550.661
17DAP/reference1.0540.161
27DAP/reference1.040480.529
39DAP/reference1.095420.035
41DAP/reference1.041190.759
42DAP/reference0.948990.046
43DAP/reference1.030920.445
47DAP/reference1.0280.448
52DAP/reference1.022371
57DAP/reference1.091770.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.98930.782
27DAP/17DAP1.016910.954
39DAP/27DAP0.993571
41DAP/39DAP1.022420.88
42DAP/41DAP0.986950.823
43DAP/42DAP1.015810.554
47DAP/43DAP1.016940.884
52DAP/47DAP0.988570.919
57DAP/52DAP1.002081
57DAP/7DAP1.002971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987410.613
17DAP/reference0.84330.082
27DAP/reference0.897990.146
39DAP/reference0.901840.198
41DAP/reference0.891530.153
42DAP/reference0.974330.506
43DAP/reference0.922010.279
47DAP/reference0.865470.168
52DAP/reference0.948060.363
57DAP/reference0.848880.097

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97030.592
17DAP/reference0.915060.075
27DAP/reference0.833970.097
39DAP/reference0.945840.322
41DAP/reference0.881480.127
42DAP/reference0.971950.482
43DAP/reference1.044550.835
47DAP/reference1.075380.035
52DAP/reference1.008060.988
57DAP/reference1.038970.409

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994190.699
17DAP/reference0.983510.696
27DAP/reference0.890670.085
39DAP/reference1.001780.889
41DAP/reference0.970020.56
42DAP/reference0.80720.087
43DAP/reference1.01070.796
47DAP/reference0.966830.478
52DAP/reference0.960630.582
57DAP/reference0.734880.034

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.053380.966
26DAP/20DAP1.044160.855
34DAP/26DAP0.996321
51DAP/34DAP1.044440.775
52DAP/51DAP0.945721
53DAP/52DAP1.013410.901
55DAP/53DAP0.947240.21
57DAP/55DAP1.015910.975
62DAP/57DAP0.982281
68DAP/62DAP1.076250.422
68DAP/14DAP0.988471

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.996560.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.89640.577
Mature Green Tomato/Ripe Tomato0.964470.66
Immature Eggplant/Mature Eggplant1.400130.054
Ripe Pepper/Ripe Tomato1.90061
Mature Eggplant/Ripe Tomato1.7766

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.149450.877
1-1-2/M821.023551
12-2/M821.045721
12-4/M820.863641
1-3/M820.916110.501
2-1-1/M821.179730.422
2-1/M821.407481
2-6/M821.002551
3-2/M821.04603
4-1-1/M820.985341
4-1/M821.007041
4-3-2/M820.913321
4-3/M821.08641
5-3/M820.957691
6-2/M820.980830.444
6-3/M820.995851
7-1/M820.821721
7-2/M821.069121
9-3-2/M820.80420.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.071580.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.151421
IL12-4/WTpooled1.069021
IL1-4/WTpooled1.322050.426
WT/WTpooled0.895861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.123070.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.968841
DC3000/delta hrp 6h1.069660.95
DC3000/delta hrp 12h0.997481
DC3000/delta hrp 24h1.042330.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.110740.121
DC3000 delta B/DC3000 delta AB1.082740.423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020351
Var 0h0.944191
Var 12h I row2-row11.128710.228
Var 12h NI row2-row10.988180.906
Var 36h I row2-row10.936241
Var 36h NI row2-row10.858830.522
Var 60h I row2-row11.161640.562
Var 60h NI row2-row10.991111
Time course 0hI-0hNI1.063420.867
Time course 12hI-12hNI1.046960.811
Time course 36hI-36hNI1.023290.799
Time course 60hI-60hNI1.171130.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.848120.391
transgenic ySAMdc/azygous control (breaker)1.720270.248
transgenic ySAMdc/azygous control (red)1.42230.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.943610.051

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.234620.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.315550.307
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.853460.36