Expression of 1-1-4.1.13.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99024 | 0.891 |
27DAP/17DAP | 0.97703 | 0.994 |
39DAP/27DAP | 1.09984 | 0.85 |
41DAP/39DAP | 0.87741 | 0.561 |
42DAP/41DAP | 1.2471 | 0.632 |
43DAP/42DAP | 1.05087 | 1 |
47DAP/43DAP | 1.07402 | 0.909 |
52DAP/47DAP | 1.18181 | 0.798 |
57DAP/52DAP | 0.86595 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01077 | 1 |
17DAP/reference | 0.95716 | 0.448 |
27DAP/reference | 0.94097 | 0.187 |
39DAP/reference | 0.90218 | 0.11 |
41DAP/reference | 0.96753 | 0.667 |
42DAP/reference | 1.05206 | 0.023 |
43DAP/reference | 1.02113 | 0.596 |
47DAP/reference | 0.9647 | 0.207 |
52DAP/reference | 0.79596 | 0.03 |
57DAP/reference | 0.92871 | 0.324 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99247 | 0.801 |
27DAP/17DAP | 0.99706 | 0.887 |
39DAP/27DAP | 0.9827 | 0.812 |
41DAP/39DAP | 0.98036 | 0.98 |
42DAP/41DAP | 1.02494 | 0.773 |
43DAP/42DAP | 1.00215 | 1 |
47DAP/43DAP | 1.02729 | 0.765 |
52DAP/47DAP | 0.91897 | 0.433 |
57DAP/52DAP | 0.99975 | 0.913 |
57DAP/7DAP | 1.00018 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98495 | 0.495 |
17DAP/reference | 1.00092 | 1 |
27DAP/reference | 0.97233 | 0.171 |
39DAP/reference | 1.07266 | 0.021 |
41DAP/reference | 1.00316 | 1 |
42DAP/reference | 1.04443 | 0.405 |
43DAP/reference | 1.0239 | 0.188 |
47DAP/reference | 1.02925 | 0.761 |
52DAP/reference | 1.019 | 0.526 |
57DAP/reference | 1.03623 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00674 | 0.933 |
17DAP/reference | 1.04498 | 0.367 |
27DAP/reference | 0.9216 | 0.155 |
39DAP/reference | 0.97049 | 0.416 |
41DAP/reference | 0.99586 | 0.584 |
42DAP/reference | 1.11496 | 0.148 |
43DAP/reference | 0.95539 | 0.378 |
47DAP/reference | 1.0478 | 0.301 |
52DAP/reference | 1.00315 | 1 |
57DAP/reference | 1.01017 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99275 | 0.699 |
17DAP/reference | 1.01361 | 0.956 |
27DAP/reference | 0.916 | 0.065 |
39DAP/reference | 0.9429 | 0.299 |
41DAP/reference | 0.97096 | 0.371 |
42DAP/reference | 0.89703 | 0.049 |
43DAP/reference | 0.91831 | 0.049 |
47DAP/reference | 0.97444 | 0.478 |
52DAP/reference | 1.00728 | 0.99 |
57DAP/reference | 0.93917 | 0.268 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92814 | 0.033 |
26DAP/20DAP | 1.13861 | 0.615 |
34DAP/26DAP | 1.06524 | 1 |
51DAP/34DAP | 0.99201 | 0.924 |
52DAP/51DAP | 1.05421 | 0.638 |
53DAP/52DAP | 1.03289 | 0.935 |
55DAP/53DAP | 1.02312 | 0.927 |
57DAP/55DAP | 1.59557 | 0.902 |
62DAP/57DAP | 1.50267 | 0.622 |
68DAP/62DAP | 0.93724 | 0.81 |
68DAP/14DAP | 1.11753 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03026 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.88287 | 0.384 |
Mature Green Tomato/Ripe Tomato | 1.06772 | 0.948 |
Immature Eggplant/Mature Eggplant | 1.52603 | 0.051 |
Ripe Pepper/Ripe Tomato | 2.10783 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.83736 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92955 | 0.944 |
1-1-2/M82 | 0.98777 | 1 |
12-2/M82 | 0.96064 | 0.955 |
12-4/M82 | 0.99365 | 1 |
1-3/M82 | 0.94269 | 0.501 |
2-1-1/M82 | 0.97501 | 0.465 |
2-1/M82 | 1.0673 | 1 |
2-6/M82 | 0.9729 | 1 |
3-2/M82 | 0.96193 | 1 |
4-1-1/M82 | 1.05394 | 1 |
4-1/M82 | 1.06882 | 1 |
4-3-2/M82 | 0.87297 | 0.487 |
4-3/M82 | 0.94194 | 1 |
5-3/M82 | 0.97388 | 1 |
6-2/M82 | 1.00525 | 1 |
6-3/M82 | 1.05072 | 1 |
7-1/M82 | 1.0215 | 1 |
7-2/M82 | 0.9926 | 1 |
9-3-2/M82 | 1.02135 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90634 | 0.243 |
IL2-6/WTpooled | 1.02185 | 1 |
IL7-5/WTpooled | 1.27183 | 0.792 |
IL7-3/WTpooled | 1.34698 | 1 |
IL12-4/WTpooled | 0.97393 | 0.71 |
IL1-4/WTpooled | 1.41006 | 0.426 |
WT/WTpooled | 1.00298 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09078 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02357 | 0.921 |
DC3000/delta hrp 6h | 1.5272 | 1 |
DC3000/delta hrp 12h | 0.96275 | 1 |
DC3000/delta hrp 24h | 1.11424 | 0.158 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12332 | 0.183 |
DC3000 delta B/DC3000 delta AB | 1.07142 | 0.453 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11614 | 1 |
Exp 36h | 1.39515 | 1 |
Exp 60h | 1.00464 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98689 | 1 |
Var 0h | 1.0346 | 1 |
Var 12h I row2-row1 | 1.25749 | 0.187 |
Var 12h NI row2-row1 | 0.91014 | 0.443 |
Var 36h I row2-row1 | 1.08172 | 1 |
Var 36h NI row2-row1 | 1.01517 | 1 |
Var 60h I row2-row1 | 1.02638 | 1 |
Var 60h NI row2-row1 | 1.27521 | 1 |
Time course 0hI-0hNI | 1.06519 | 0.852 |
Time course 12hI-12hNI | 1.04947 | 0.734 |
Time course 36hI-36hNI | 0.93853 | 0.202 |
Time course 60hI-60hNI | 1.08332 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04282 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.47999 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.17526 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98393 | 0.323 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99312 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90444 | 0.172 |
Manapal/WT (break) | 0.88395 | 0.333 |
Manapal/WT (red) | 1.65188 | 0.134 |
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