Expression of 1-1-4.1.13.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990240.891
27DAP/17DAP0.977030.994
39DAP/27DAP1.099840.85
41DAP/39DAP0.877410.561
42DAP/41DAP1.24710.632
43DAP/42DAP1.050871
47DAP/43DAP1.074020.909
52DAP/47DAP1.181810.798
57DAP/52DAP0.865950.759

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.010771
17DAP/reference0.957160.448
27DAP/reference0.940970.187
39DAP/reference0.902180.11
41DAP/reference0.967530.667
42DAP/reference1.052060.023
43DAP/reference1.021130.596
47DAP/reference0.96470.207
52DAP/reference0.795960.03
57DAP/reference0.928710.324

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.992470.801
27DAP/17DAP0.997060.887
39DAP/27DAP0.98270.812
41DAP/39DAP0.980360.98
42DAP/41DAP1.024940.773
43DAP/42DAP1.002151
47DAP/43DAP1.027290.765
52DAP/47DAP0.918970.433
57DAP/52DAP0.999750.913
57DAP/7DAP1.000181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.984950.495
17DAP/reference1.000921
27DAP/reference0.972330.171
39DAP/reference1.072660.021
41DAP/reference1.003161
42DAP/reference1.044430.405
43DAP/reference1.02390.188
47DAP/reference1.029250.761
52DAP/reference1.0190.526
57DAP/reference1.036230.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.006740.933
17DAP/reference1.044980.367
27DAP/reference0.92160.155
39DAP/reference0.970490.416
41DAP/reference0.995860.584
42DAP/reference1.114960.148
43DAP/reference0.955390.378
47DAP/reference1.04780.301
52DAP/reference1.003151
57DAP/reference1.010170.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992750.699
17DAP/reference1.013610.956
27DAP/reference0.9160.065
39DAP/reference0.94290.299
41DAP/reference0.970960.371
42DAP/reference0.897030.049
43DAP/reference0.918310.049
47DAP/reference0.974440.478
52DAP/reference1.007280.99
57DAP/reference0.939170.268

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.928140.033
26DAP/20DAP1.138610.615
34DAP/26DAP1.065241
51DAP/34DAP0.992010.924
52DAP/51DAP1.054210.638
53DAP/52DAP1.032890.935
55DAP/53DAP1.023120.927
57DAP/55DAP1.595570.902
62DAP/57DAP1.502670.622
68DAP/62DAP0.937240.81
68DAP/14DAP1.117530.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.030260.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.882870.384
Mature Green Tomato/Ripe Tomato1.067720.948
Immature Eggplant/Mature Eggplant1.526030.051
Ripe Pepper/Ripe Tomato2.107830.256
Mature Eggplant/Ripe Tomato1.837360.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.929550.944
1-1-2/M820.987771
12-2/M820.960640.955
12-4/M820.993651
1-3/M820.942690.501
2-1-1/M820.975010.465
2-1/M821.06731
2-6/M820.97291
3-2/M820.961931
4-1-1/M821.053941
4-1/M821.068821
4-3-2/M820.872970.487
4-3/M820.941941
5-3/M820.973881
6-2/M821.005251
6-3/M821.050721
7-1/M821.02151
7-2/M820.99261
9-3-2/M821.021351

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.906340.243
IL2-6/WTpooled1.021851
IL7-5/WTpooled1.271830.792
IL7-3/WTpooled1.346981
IL12-4/WTpooled0.973930.71
IL1-4/WTpooled1.410060.426
WT/WTpooled1.002981

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.090780.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.023570.921
DC3000/delta hrp 6h1.52721
DC3000/delta hrp 12h0.962751
DC3000/delta hrp 24h1.114240.158

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.123320.183
DC3000 delta B/DC3000 delta AB1.071420.453

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.116141
Exp 36h1.395151
Exp 60h1.004641

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.986891
Var 0h1.03461
Var 12h I row2-row11.257490.187
Var 12h NI row2-row10.910140.443
Var 36h I row2-row11.081721
Var 36h NI row2-row11.015171
Var 60h I row2-row11.026381
Var 60h NI row2-row11.275211
Time course 0hI-0hNI1.065190.852
Time course 12hI-12hNI1.049470.734
Time course 36hI-36hNI0.938530.202
Time course 60hI-60hNI1.083320.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.042820.699
transgenic ySAMdc/azygous control (breaker)1.479990.178
transgenic ySAMdc/azygous control (red)1.175260.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.983930.323

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.993121

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.904440.172
Manapal/WT (break)0.883950.333
Manapal/WT (red)1.651880.134