Expression of 1-1-4.1.13.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.075380.893
27DAP/17DAP1.073740.88
39DAP/27DAP0.927930.522
41DAP/39DAP1.085110.788
42DAP/41DAP1.06620.933
43DAP/42DAP1.099730.968
47DAP/43DAP0.990780.913
52DAP/47DAP1.033440.971
57DAP/52DAP1.096810.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.876750.097
17DAP/reference1.061760.399
27DAP/reference0.992510.797
39DAP/reference1.05740.453
41DAP/reference1.105840.287
42DAP/reference0.914590.017
43DAP/reference1.027160.758
47DAP/reference0.972670.418
52DAP/reference0.804950.047
57DAP/reference1.015991

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.916780.363
27DAP/17DAP1.162190.617
39DAP/27DAP0.961360.721
41DAP/39DAP0.944120.849
42DAP/41DAP1.122110.495
43DAP/42DAP1.270590.026
47DAP/43DAP0.966620.846
52DAP/47DAP0.93760.777
57DAP/52DAP1.175950.444
57DAP/7DAP1.289570.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.367840.041
17DAP/reference1.168250.045
27DAP/reference1.221460.16
39DAP/reference1.41880.023
41DAP/reference1.421630.023
42DAP/reference1.397340.018
43DAP/reference1.569050.008
47DAP/reference1.399590.026
52DAP/reference1.379980.028
57DAP/reference1.240690.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.099510.559
17DAP/reference1.048010.33
27DAP/reference1.005671
39DAP/reference0.945150.243
41DAP/reference0.935830.231
42DAP/reference1.007190.655
43DAP/reference1.027680.831
47DAP/reference1.005931
52DAP/reference1.028471
57DAP/reference1.025790.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.158390.04
17DAP/reference1.045420.854
27DAP/reference1.122080.143
39DAP/reference1.033510.792
41DAP/reference0.97980.682
42DAP/reference1.060550.612
43DAP/reference0.973970.59
47DAP/reference1.106090.228
52DAP/reference1.92320.03
57DAP/reference0.88050.161

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.974751
26DAP/20DAP1.423030.195
34DAP/26DAP1.183940.819
51DAP/34DAP1.243320.387
52DAP/51DAP0.912071
53DAP/52DAP0.971250.854
55DAP/53DAP0.841680.225
57DAP/55DAP1.156830.461
62DAP/57DAP1.251170.569
68DAP/62DAP1.017780.914
68DAP/14DAP0.70958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.322520.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.670540.164
Mature Green Tomato/Ripe Tomato0.81680.347
Immature Eggplant/Mature Eggplant0.64920.069
Ripe Pepper/Ripe Tomato1.393260.256
Mature Eggplant/Ripe Tomato0.643990.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.861990.605
1-1-2/M821.210191
12-2/M820.991540.955
12-4/M820.897991
1-3/M821.99236
2-1-1/M821.039380.764
2-1/M820.891460.74
2-6/M821.032980.695
3-2/M820.9381
4-1-1/M821.15561
4-1/M821.146970.466
4-3-2/M821.335741
4-3/M821.345791
5-3/M820.992261
6-2/M821.404420.219
6-3/M820.981031
7-1/M821.182060.925
7-2/M821.182721
9-3-2/M821.21451

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.754910.247
IL2-6/WTpooled1.017411
IL7-5/WTpooled0.76991
IL7-3/WTpooled1.008891
IL12-4/WTpooled1.002341
IL1-4/WTpooled0.966750.834
WT/WTpooled0.985771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.972891

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.057820.921
DC3000/delta hrp 6h1.084211
DC3000/delta hrp 12h1.086631
DC3000/delta hrp 24h1.003261

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.227540.406

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.041991
Exp 36h0.997331
Exp 60h1.141681

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.061041
Var 0h1.092050.374
Var 12h I row2-row10.846920.357
Var 12h NI row2-row11.853030.649
Var 36h I row2-row10.956231
Var 36h NI row2-row10.770660.478
Var 60h I row2-row10.998561
Var 60h NI row2-row10.747950.63
Time course 0hI-0hNI0.956330.754
Time course 12hI-12hNI0.988810.964
Time course 36hI-36hNI1.295130.013
Time course 60hI-60hNI2.697760.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.941960.282
transgenic ySAMdc/azygous control (breaker)0.942090.49
transgenic ySAMdc/azygous control (red)0.94981

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.996210.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.737460.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.885080.172
Manapal/WT (break)0.893651
Manapal/WT (red)0.776980.181