Expression of 1-1-4.1.13.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07538 | 0.893 |
27DAP/17DAP | 1.07374 | 0.88 |
39DAP/27DAP | 0.92793 | 0.522 |
41DAP/39DAP | 1.08511 | 0.788 |
42DAP/41DAP | 1.0662 | 0.933 |
43DAP/42DAP | 1.09973 | 0.968 |
47DAP/43DAP | 0.99078 | 0.913 |
52DAP/47DAP | 1.03344 | 0.971 |
57DAP/52DAP | 1.09681 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87675 | 0.097 |
17DAP/reference | 1.06176 | 0.399 |
27DAP/reference | 0.99251 | 0.797 |
39DAP/reference | 1.0574 | 0.453 |
41DAP/reference | 1.10584 | 0.287 |
42DAP/reference | 0.91459 | 0.017 |
43DAP/reference | 1.02716 | 0.758 |
47DAP/reference | 0.97267 | 0.418 |
52DAP/reference | 0.80495 | 0.047 |
57DAP/reference | 1.01599 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91678 | 0.363 |
27DAP/17DAP | 1.16219 | 0.617 |
39DAP/27DAP | 0.96136 | 0.721 |
41DAP/39DAP | 0.94412 | 0.849 |
42DAP/41DAP | 1.12211 | 0.495 |
43DAP/42DAP | 1.27059 | 0.026 |
47DAP/43DAP | 0.96662 | 0.846 |
52DAP/47DAP | 0.9376 | 0.777 |
57DAP/52DAP | 1.17595 | 0.444 |
57DAP/7DAP | 1.28957 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36784 | 0.041 |
17DAP/reference | 1.16825 | 0.045 |
27DAP/reference | 1.22146 | 0.16 |
39DAP/reference | 1.4188 | 0.023 |
41DAP/reference | 1.42163 | 0.023 |
42DAP/reference | 1.39734 | 0.018 |
43DAP/reference | 1.56905 | 0.008 |
47DAP/reference | 1.39959 | 0.026 |
52DAP/reference | 1.37998 | 0.028 |
57DAP/reference | 1.24069 | 0.117 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09951 | 0.559 |
17DAP/reference | 1.04801 | 0.33 |
27DAP/reference | 1.00567 | 1 |
39DAP/reference | 0.94515 | 0.243 |
41DAP/reference | 0.93583 | 0.231 |
42DAP/reference | 1.00719 | 0.655 |
43DAP/reference | 1.02768 | 0.831 |
47DAP/reference | 1.00593 | 1 |
52DAP/reference | 1.02847 | 1 |
57DAP/reference | 1.02579 | 0.834 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15839 | 0.04 |
17DAP/reference | 1.04542 | 0.854 |
27DAP/reference | 1.12208 | 0.143 |
39DAP/reference | 1.03351 | 0.792 |
41DAP/reference | 0.9798 | 0.682 |
42DAP/reference | 1.06055 | 0.612 |
43DAP/reference | 0.97397 | 0.59 |
47DAP/reference | 1.10609 | 0.228 |
52DAP/reference | 1.9232 | 0.03 |
57DAP/reference | 0.8805 | 0.161 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97475 | 1 |
26DAP/20DAP | 1.42303 | 0.195 |
34DAP/26DAP | 1.18394 | 0.819 |
51DAP/34DAP | 1.24332 | 0.387 |
52DAP/51DAP | 0.91207 | 1 |
53DAP/52DAP | 0.97125 | 0.854 |
55DAP/53DAP | 0.84168 | 0.225 |
57DAP/55DAP | 1.15683 | 0.461 |
62DAP/57DAP | 1.25117 | 0.569 |
68DAP/62DAP | 1.01778 | 0.914 |
68DAP/14DAP | 0.70958 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.32252 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.67054 | 0.164 |
Mature Green Tomato/Ripe Tomato | 0.8168 | 0.347 |
Immature Eggplant/Mature Eggplant | 0.6492 | 0.069 |
Ripe Pepper/Ripe Tomato | 1.39326 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.64399 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.86199 | 0.605 |
1-1-2/M82 | 1.21019 | 1 |
12-2/M82 | 0.99154 | 0.955 |
12-4/M82 | 0.89799 | 1 |
1-3/M82 | 1.99236 | |
2-1-1/M82 | 1.03938 | 0.764 |
2-1/M82 | 0.89146 | 0.74 |
2-6/M82 | 1.03298 | 0.695 |
3-2/M82 | 0.9381 | |
4-1-1/M82 | 1.1556 | 1 |
4-1/M82 | 1.14697 | 0.466 |
4-3-2/M82 | 1.33574 | 1 |
4-3/M82 | 1.34579 | 1 |
5-3/M82 | 0.99226 | 1 |
6-2/M82 | 1.40442 | 0.219 |
6-3/M82 | 0.98103 | 1 |
7-1/M82 | 1.18206 | 0.925 |
7-2/M82 | 1.18272 | 1 |
9-3-2/M82 | 1.2145 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75491 | 0.247 |
IL2-6/WTpooled | 1.01741 | 1 |
IL7-5/WTpooled | 0.7699 | 1 |
IL7-3/WTpooled | 1.00889 | 1 |
IL12-4/WTpooled | 1.00234 | 1 |
IL1-4/WTpooled | 0.96675 | 0.834 |
WT/WTpooled | 0.98577 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97289 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05782 | 0.921 |
DC3000/delta hrp 6h | 1.08421 | 1 |
DC3000/delta hrp 12h | 1.08663 | 1 |
DC3000/delta hrp 24h | 1.00326 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.22754 | 0.406 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04199 | 1 |
Exp 36h | 0.99733 | 1 |
Exp 60h | 1.14168 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06104 | 1 |
Var 0h | 1.09205 | 0.374 |
Var 12h I row2-row1 | 0.84692 | 0.357 |
Var 12h NI row2-row1 | 1.85303 | 0.649 |
Var 36h I row2-row1 | 0.95623 | 1 |
Var 36h NI row2-row1 | 0.77066 | 0.478 |
Var 60h I row2-row1 | 0.99856 | 1 |
Var 60h NI row2-row1 | 0.74795 | 0.63 |
Time course 0hI-0hNI | 0.95633 | 0.754 |
Time course 12hI-12hNI | 0.98881 | 0.964 |
Time course 36hI-36hNI | 1.29513 | 0.013 |
Time course 60hI-60hNI | 2.69776 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94196 | 0.282 |
transgenic ySAMdc/azygous control (breaker) | 0.94209 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.9498 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99621 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73746 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88508 | 0.172 |
Manapal/WT (break) | 0.89365 | 1 |
Manapal/WT (red) | 0.77698 | 0.181 |
|
|