Expression of 1-1-4.1.14.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.064081
27DAP/17DAP1.085180.872
39DAP/27DAP2.388220.038
41DAP/39DAP0.763320.196
42DAP/41DAP1.18790.974
43DAP/42DAP1.290610.999
47DAP/43DAP1.488640.412
52DAP/47DAP2.58550.104
57DAP/52DAP1.354380.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.155760.35
17DAP/reference0.896230.194
27DAP/reference1.012411
39DAP/reference0.95330.587
41DAP/reference0.88660.267
42DAP/reference1.122990.151
43DAP/reference0.992320.763
47DAP/reference1.948010.001
52DAP/reference3.039520.007
57DAP/reference1.53260.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.802020.09
27DAP/17DAP1.307690.112
39DAP/27DAP0.925010.54
41DAP/39DAP1.119541
42DAP/41DAP1.25440.084
43DAP/42DAP1.637790.035
47DAP/43DAP1.035640.884
52DAP/47DAP1.056180.965
57DAP/52DAP1.691220.036
57DAP/7DAP1.830460.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.187310.311
17DAP/reference0.934760.082
27DAP/reference0.852220.019
39DAP/reference0.733090.013
41DAP/reference0.845850.133
42DAP/reference0.912460.07
43DAP/reference1.255820.066
47DAP/reference1.227080.155
52DAP/reference0.980390.523
57DAP/reference0.934670.314

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028940.926
17DAP/reference1.075320.92
27DAP/reference1.39570.139
39DAP/reference1.169960.346
41DAP/reference1.132760.614
42DAP/reference1.181810.39
43DAP/reference0.868780.175
47DAP/reference1.064050.291
52DAP/reference0.990460.619
57DAP/reference1.009220.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975620.489
17DAP/reference0.891910.313
27DAP/reference0.849780.069
39DAP/reference0.865260.037
41DAP/reference0.795320.086
42DAP/reference1.126260.556
43DAP/reference1.454230.008
47DAP/reference1.452770.016
52DAP/reference2.414240.028
57DAP/reference3.01970.005

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.27670.966
26DAP/20DAP1.77550.145
34DAP/26DAP0.924060.861
51DAP/34DAP1.632050.034
52DAP/51DAP1.153440.431
53DAP/52DAP1.038050.783
55DAP/53DAP0.754250.026
57DAP/55DAP1.046880.938
62DAP/57DAP1.108730.515
68DAP/62DAP0.801950.378
68DAP/14DAP1.502620.053

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.930620.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.617760.146
Mature Green Tomato/Ripe Tomato0.423230.027
Immature Eggplant/Mature Eggplant0.836230.092
Ripe Pepper/Ripe Tomato0.251130.224
Mature Eggplant/Ripe Tomato0.329870.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.9606
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.11302
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.93245
7-2/M82N/AN/A
9-3-2/M821.64702

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.142230.365
IL2-6/WTpooled0.689370.358
IL7-5/WTpooled1.192720.792
IL7-3/WTpooled1.126691
IL12-4/WTpooled1.085580.546
IL1-4/WTpooled0.947640.834
WT/WTpooled1.018521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.012561

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h0.98260.95
DC3000/delta hrp 12h1.227481
DC3000/delta hrp 24h0.741870.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.406040.042
DC3000 delta B/DC3000 delta AB1.383780.119

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.101241
Exp 36h1.136521
Exp 60h1.128170.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.003691
Var 0h1.027650.98
Var 12h I row2-row11.152220.613
Var 12h NI row2-row11.14650.281
Var 36h I row2-row10.937821
Var 36h NI row2-row10.901370.329
Var 60h I row2-row10.771530.439
Var 60h NI row2-row10.946930.818
Time course 0hI-0hNI1.010480.867
Time course 12hI-12hNI1.016770.811
Time course 36hI-36hNI1.437430.005
Time course 60hI-60hNI4.51490.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.173120.326
transgenic ySAMdc/azygous control (breaker)0.864530.49
transgenic ySAMdc/azygous control (red)1.034411

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.964310.362

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.101510.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.028821
Manapal/WT (break)1.369660.381
Manapal/WT (red)1.344491