Expression of 1-1-4.1.14.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06408 | 1 |
27DAP/17DAP | 1.08518 | 0.872 |
39DAP/27DAP | 2.38822 | 0.038 |
41DAP/39DAP | 0.76332 | 0.196 |
42DAP/41DAP | 1.1879 | 0.974 |
43DAP/42DAP | 1.29061 | 0.999 |
47DAP/43DAP | 1.48864 | 0.412 |
52DAP/47DAP | 2.5855 | 0.104 |
57DAP/52DAP | 1.35438 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15576 | 0.35 |
17DAP/reference | 0.89623 | 0.194 |
27DAP/reference | 1.01241 | 1 |
39DAP/reference | 0.9533 | 0.587 |
41DAP/reference | 0.8866 | 0.267 |
42DAP/reference | 1.12299 | 0.151 |
43DAP/reference | 0.99232 | 0.763 |
47DAP/reference | 1.94801 | 0.001 |
52DAP/reference | 3.03952 | 0.007 |
57DAP/reference | 1.5326 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80202 | 0.09 |
27DAP/17DAP | 1.30769 | 0.112 |
39DAP/27DAP | 0.92501 | 0.54 |
41DAP/39DAP | 1.11954 | 1 |
42DAP/41DAP | 1.2544 | 0.084 |
43DAP/42DAP | 1.63779 | 0.035 |
47DAP/43DAP | 1.03564 | 0.884 |
52DAP/47DAP | 1.05618 | 0.965 |
57DAP/52DAP | 1.69122 | 0.036 |
57DAP/7DAP | 1.83046 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18731 | 0.311 |
17DAP/reference | 0.93476 | 0.082 |
27DAP/reference | 0.85222 | 0.019 |
39DAP/reference | 0.73309 | 0.013 |
41DAP/reference | 0.84585 | 0.133 |
42DAP/reference | 0.91246 | 0.07 |
43DAP/reference | 1.25582 | 0.066 |
47DAP/reference | 1.22708 | 0.155 |
52DAP/reference | 0.98039 | 0.523 |
57DAP/reference | 0.93467 | 0.314 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02894 | 0.926 |
17DAP/reference | 1.07532 | 0.92 |
27DAP/reference | 1.3957 | 0.139 |
39DAP/reference | 1.16996 | 0.346 |
41DAP/reference | 1.13276 | 0.614 |
42DAP/reference | 1.18181 | 0.39 |
43DAP/reference | 0.86878 | 0.175 |
47DAP/reference | 1.06405 | 0.291 |
52DAP/reference | 0.99046 | 0.619 |
57DAP/reference | 1.00922 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97562 | 0.489 |
17DAP/reference | 0.89191 | 0.313 |
27DAP/reference | 0.84978 | 0.069 |
39DAP/reference | 0.86526 | 0.037 |
41DAP/reference | 0.79532 | 0.086 |
42DAP/reference | 1.12626 | 0.556 |
43DAP/reference | 1.45423 | 0.008 |
47DAP/reference | 1.45277 | 0.016 |
52DAP/reference | 2.41424 | 0.028 |
57DAP/reference | 3.0197 | 0.005 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.2767 | 0.966 |
26DAP/20DAP | 1.7755 | 0.145 |
34DAP/26DAP | 0.92406 | 0.861 |
51DAP/34DAP | 1.63205 | 0.034 |
52DAP/51DAP | 1.15344 | 0.431 |
53DAP/52DAP | 1.03805 | 0.783 |
55DAP/53DAP | 0.75425 | 0.026 |
57DAP/55DAP | 1.04688 | 0.938 |
62DAP/57DAP | 1.10873 | 0.515 |
68DAP/62DAP | 0.80195 | 0.378 |
68DAP/14DAP | 1.50262 | 0.053 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.93062 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.61776 | 0.146 |
Mature Green Tomato/Ripe Tomato | 0.42323 | 0.027 |
Immature Eggplant/Mature Eggplant | 0.83623 | 0.092 |
Ripe Pepper/Ripe Tomato | 0.25113 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.32987 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.9606 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.11302 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.93245 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.64702 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.14223 | 0.365 |
IL2-6/WTpooled | 0.68937 | 0.358 |
IL7-5/WTpooled | 1.19272 | 0.792 |
IL7-3/WTpooled | 1.12669 | 1 |
IL12-4/WTpooled | 1.08558 | 0.546 |
IL1-4/WTpooled | 0.94764 | 0.834 |
WT/WTpooled | 1.01852 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01256 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 0.9826 | 0.95 |
DC3000/delta hrp 12h | 1.22748 | 1 |
DC3000/delta hrp 24h | 0.74187 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.40604 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.38378 | 0.119 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10124 | 1 |
Exp 36h | 1.13652 | 1 |
Exp 60h | 1.12817 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00369 | 1 |
Var 0h | 1.02765 | 0.98 |
Var 12h I row2-row1 | 1.15222 | 0.613 |
Var 12h NI row2-row1 | 1.1465 | 0.281 |
Var 36h I row2-row1 | 0.93782 | 1 |
Var 36h NI row2-row1 | 0.90137 | 0.329 |
Var 60h I row2-row1 | 0.77153 | 0.439 |
Var 60h NI row2-row1 | 0.94693 | 0.818 |
Time course 0hI-0hNI | 1.01048 | 0.867 |
Time course 12hI-12hNI | 1.01677 | 0.811 |
Time course 36hI-36hNI | 1.43743 | 0.005 |
Time course 60hI-60hNI | 4.5149 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.17312 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 0.86453 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.03441 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96431 | 0.362 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.10151 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02882 | 1 |
Manapal/WT (break) | 1.36966 | 0.381 |
Manapal/WT (red) | 1.34449 | 1 |
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