Tomato Functional Genomics Database (TFGD)

Expression of 1-1-4.1.14.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.13417	0.646
27DAP/17DAP	1.04511	1
39DAP/27DAP	1.15661	0.75
41DAP/39DAP	1.5113	0.225
42DAP/41DAP	1.54109	0.488
43DAP/42DAP	0.87697	0.709
47DAP/43DAP	1.14957	0.733
52DAP/47DAP	1.39097	0.667
57DAP/52DAP	0.72952	0.55

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.48486	0.027
17DAP/reference	0.83029	0.208
27DAP/reference	1.30397	0.077
39DAP/reference	1.01325	0.857
41DAP/reference	0.96826	0.667
42DAP/reference	1.38582	0.065
43DAP/reference	1.31238	0.05
47DAP/reference	1.5919	0.046
52DAP/reference	2.30096	0.02
57DAP/reference	2.29033	0.019

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9889	0.782
27DAP/17DAP	1.04121	0.909
39DAP/27DAP	1.1006	0.296
41DAP/39DAP	1.08872	0.656
42DAP/41DAP	1.04399	0.836
43DAP/42DAP	1.36414	0.015
47DAP/43DAP	0.92844	0.418
52DAP/47DAP	0.94518	0.624
57DAP/52DAP	0.95865	0.591
57DAP/7DAP	1.77091	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.95628	0.445
17DAP/reference	0.78787	0.011
27DAP/reference	0.83908	0.01
39DAP/reference	0.82948	0.011
41DAP/reference	0.97715	0.449
42DAP/reference	0.87598	0.016
43DAP/reference	0.81814	0.016
47DAP/reference	1.72686	0.145
52DAP/reference	0.7613	0.014
57DAP/reference	0.78322	0.008

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.83479	0.248
17DAP/reference	0.95993	0.389
27DAP/reference	1.51944	0.271
39DAP/reference	2.20879	0.056
41DAP/reference	2.93047	0.011
42DAP/reference	1.73183	0.099
43DAP/reference	1.32556	0.441
47DAP/reference	1.77536	0.008
52DAP/reference	1.47384	0.008
57DAP/reference	1.00035	0.549

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91056	0.036
17DAP/reference	1.22298	1
27DAP/reference	0.8332	0.042
39DAP/reference	0.80925	0.029
41DAP/reference	1.09528	1
42DAP/reference	1.78429	0.433
43DAP/reference	1.62707	0.445
47DAP/reference	2.21085	0.026
52DAP/reference	0.9201	0.472
57DAP/reference	3.37655	0.144

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.28181	0.966
26DAP/20DAP	1.01396	1
34DAP/26DAP	1.04035	1
51DAP/34DAP	0.99172	0.917
52DAP/51DAP	1.03319	0.904
53DAP/52DAP	1.08536	0.712
55DAP/53DAP	1.08401	0.487
57DAP/55DAP	1.52067	0.961
62DAP/57DAP	1.70363	0.115
68DAP/62DAP	3.67245	0.115
68DAP/14DAP	11.6841	0.018

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.16917	0.496

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.79317	0.301
Mature Green Tomato/Ripe Tomato	0.87234	0.317
Immature Eggplant/Mature Eggplant	0.86235	0.493
Ripe Pepper/Ripe Tomato	0.72506	0.293
Mature Eggplant/Ripe Tomato	0.76477	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.9615	0.944
1-1-2/M82	0.8774	1
12-2/M82	1.24093	1
12-4/M82	1.11367	1
1-3/M82	0.92971	0.501
2-1-1/M82	0.5358
2-1/M82	0.95507	0.74
2-6/M82	1.04807	1
3-2/M82	0.97646
4-1-1/M82	0.9385	1
4-1/M82	1.1094	1
4-3-2/M82	1.04877	1
4-3/M82	0.77368	0.46
5-3/M82	0.90797	0.642
6-2/M82	1.0638
6-3/M82	1.00051	1
7-1/M82	0.99104
7-2/M82	0.87213
9-3-2/M82	1.001	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.81361	0.321
IL2-6/WTpooled	1.01455
IL7-5/WTpooled	1.17662	1
IL7-3/WTpooled	1.35891
IL12-4/WTpooled	0.94408	1
IL1-4/WTpooled	1.10848	1
WT/WTpooled	1.65519	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.95809	0.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.97608	1
DC3000/delta hrp 6h	0.76517	0.95
DC3000/delta hrp 12h	1.17773	1
DC3000/delta hrp 24h	1.10576	0.502

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.33481
DC3000 delta B/DC3000 delta AB	0.99818	1

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.02316	1
Exp 36h	0.69886	0.406
Exp 60h	0.76488	0.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.8818	1
Var 0h	1.21393	0.325
Var 12h I row2-row1	1.01683	1
Var 12h NI row2-row1	0.86679	0.443
Var 36h I row2-row1	0.97218	1
Var 36h NI row2-row1	0.984	0.706
Var 60h I row2-row1	1.15568	0.543
Var 60h NI row2-row1	1.24151	0.904
Time course 0hI-0hNI	1.03173	0.852
Time course 12hI-12hNI	1.07801	0.762
Time course 36hI-36hNI	0.96921	0.533
Time course 60hI-60hNI	1.24313	0.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.00618	1
transgenic ySAMdc/azygous control (breaker)	1.13197	1
transgenic ySAMdc/azygous control (red)	1.07945	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.87801	0.055

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.66054	0.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.93544	0.093
Manapal/WT (break)	1.80333	0.381
Manapal/WT (red)	1.01662	1