Expression of 1-1-4.1.14.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07508 | 0.827 |
27DAP/17DAP | 1.00395 | 0.994 |
39DAP/27DAP | 0.81339 | 0.421 |
41DAP/39DAP | 1.32502 | 0.413 |
42DAP/41DAP | 1.06845 | 1 |
43DAP/42DAP | 0.99802 | 0.932 |
47DAP/43DAP | 0.72883 | 0.251 |
52DAP/47DAP | 1.2277 | 0.57 |
57DAP/52DAP | 0.96351 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89745 | 0.063 |
17DAP/reference | 1.00234 | 1 |
27DAP/reference | 0.99775 | 0.867 |
39DAP/reference | 0.99159 | 0.921 |
41DAP/reference | 0.87905 | 0.154 |
42DAP/reference | 0.9089 | 0.008 |
43DAP/reference | 1.0219 | 0.518 |
47DAP/reference | 0.93611 | 0.032 |
52DAP/reference | 1.0162 | 1 |
57DAP/reference | 0.95463 | 0.096 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02114 | 0.881 |
27DAP/17DAP | 0.98998 | 0.887 |
39DAP/27DAP | 1.03826 | 0.611 |
41DAP/39DAP | 1.00516 | 1 |
42DAP/41DAP | 0.97261 | 0.732 |
43DAP/42DAP | 1.00201 | 1 |
47DAP/43DAP | 0.99527 | 0.99 |
52DAP/47DAP | 1.01567 | 0.939 |
57DAP/52DAP | 0.99224 | 0.833 |
57DAP/7DAP | 1.13993 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91658 | 0.129 |
17DAP/reference | 0.89985 | 0.02 |
27DAP/reference | 0.88681 | 0.014 |
39DAP/reference | 1.00583 | 1 |
41DAP/reference | 0.94012 | 0.098 |
42DAP/reference | 0.95417 | 0.095 |
43DAP/reference | 0.96431 | 0.385 |
47DAP/reference | 0.87155 | 0.128 |
52DAP/reference | 0.95623 | 0.15 |
57DAP/reference | 0.90851 | 0.024 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96424 | 0.503 |
17DAP/reference | 0.96166 | 0.326 |
27DAP/reference | 0.80887 | 0.093 |
39DAP/reference | 0.87991 | 0.144 |
41DAP/reference | 0.89264 | 0.218 |
42DAP/reference | 0.90351 | 0.108 |
43DAP/reference | 0.9724 | 0.581 |
47DAP/reference | 1.01081 | 0.943 |
52DAP/reference | 0.96038 | 0.143 |
57DAP/reference | 1.01054 | 0.887 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92595 | 0.104 |
17DAP/reference | 0.97255 | 0.681 |
27DAP/reference | 1.0191 | |
39DAP/reference | 0.96461 | 0.101 |
41DAP/reference | 0.85804 | 0.331 |
42DAP/reference | 0.7884 | 0.134 |
43DAP/reference | 0.80818 | 0.11 |
47DAP/reference | 0.95566 | 0.409 |
52DAP/reference | 0.98773 | 0.838 |
57DAP/reference | 0.69718 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91239 | 0.566 |
26DAP/20DAP | 0.99923 | 1 |
34DAP/26DAP | 0.97229 | 0.879 |
51DAP/34DAP | 0.98162 | 0.844 |
52DAP/51DAP | 1.00862 | 0.915 |
53DAP/52DAP | 1.04049 | 0.868 |
55DAP/53DAP | 0.93116 | 0.5 |
57DAP/55DAP | 1.04556 | 1 |
62DAP/57DAP | 1.03138 | 0.935 |
68DAP/62DAP | 0.95431 | 0.722 |
68DAP/14DAP | 1.10084 | 0.295 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04096 | 0.527 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.94193 | 0.611 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.62594 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05301 | 1 |
1-1-2/M82 | 0.96744 | 1 |
12-2/M82 | 1.0678 | 1 |
12-4/M82 | 0.89663 | 1 |
1-3/M82 | 0.83972 | 0.441 |
2-1-1/M82 | 1.02594 | 1 |
2-1/M82 | 1.10488 | |
2-6/M82 | 0.96747 | 1 |
3-2/M82 | 0.99648 | 1 |
4-1-1/M82 | 0.92212 | 1 |
4-1/M82 | 0.60704 | 1 |
4-3-2/M82 | 1.01259 | 1 |
4-3/M82 | 1.00603 | 1 |
5-3/M82 | 1.0167 | 1 |
6-2/M82 | 0.95714 | 1 |
6-3/M82 | 0.99128 | 1 |
7-1/M82 | 0.79367 | 0.509 |
7-2/M82 | 1.14638 | 0.324 |
9-3-2/M82 | 0.91751 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.9943 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.86585 | 0.418 |
IL12-4/WTpooled | 0.96125 | 0.71 |
IL1-4/WTpooled | 1.24025 | |
WT/WTpooled | 0.98363 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.73281 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00802 | 1 |
DC3000/delta hrp 6h | 1.02764 | 1 |
DC3000/delta hrp 12h | 0.96507 | 1 |
DC3000/delta hrp 24h | 1.05091 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08152 | 0.208 |
DC3000 delta B/DC3000 delta AB | 0.9989 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90951 | 0.328 |
Exp 36h | 0.74964 | 0.406 |
Exp 60h | 0.63372 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01477 | 1 |
Var 0h | 0.77347 | 1 |
Var 12h I row2-row1 | 0.98526 | 0.948 |
Var 12h NI row2-row1 | 1.08307 | 1 |
Var 36h I row2-row1 | 0.93212 | 1 |
Var 36h NI row2-row1 | 1.02457 | 1 |
Var 60h I row2-row1 | 1.476 | 0.562 |
Var 60h NI row2-row1 | 0.97557 | 1 |
Time course 0hI-0hNI | 0.95168 | 0.572 |
Time course 12hI-12hNI | 0.9806 | 0.799 |
Time course 36hI-36hNI | 0.94662 | 0.28 |
Time course 60hI-60hNI | 0.51014 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06915 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 1.52001 | 0.161 |
transgenic ySAMdc/azygous control (red) | 1.11652 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9706 | 0.231 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.60608 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.25358 | 0.083 |
Manapal/WT (break) | 2.78332 | 0.123 |
Manapal/WT (red) | 3.52944 | 0.137 |
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