Expression of 1-1-4.1.14.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.075080.827
27DAP/17DAP1.003950.994
39DAP/27DAP0.813390.421
41DAP/39DAP1.325020.413
42DAP/41DAP1.068451
43DAP/42DAP0.998020.932
47DAP/43DAP0.728830.251
52DAP/47DAP1.22770.57
57DAP/52DAP0.963510.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.897450.063
17DAP/reference1.002341
27DAP/reference0.997750.867
39DAP/reference0.991590.921
41DAP/reference0.879050.154
42DAP/reference0.90890.008
43DAP/reference1.02190.518
47DAP/reference0.936110.032
52DAP/reference1.01621
57DAP/reference0.954630.096

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.021140.881
27DAP/17DAP0.989980.887
39DAP/27DAP1.038260.611
41DAP/39DAP1.005161
42DAP/41DAP0.972610.732
43DAP/42DAP1.002011
47DAP/43DAP0.995270.99
52DAP/47DAP1.015670.939
57DAP/52DAP0.992240.833
57DAP/7DAP1.139930.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.916580.129
17DAP/reference0.899850.02
27DAP/reference0.886810.014
39DAP/reference1.005831
41DAP/reference0.940120.098
42DAP/reference0.954170.095
43DAP/reference0.964310.385
47DAP/reference0.871550.128
52DAP/reference0.956230.15
57DAP/reference0.908510.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.964240.503
17DAP/reference0.961660.326
27DAP/reference0.808870.093
39DAP/reference0.879910.144
41DAP/reference0.892640.218
42DAP/reference0.903510.108
43DAP/reference0.97240.581
47DAP/reference1.010810.943
52DAP/reference0.960380.143
57DAP/reference1.010540.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.925950.104
17DAP/reference0.972550.681
27DAP/reference1.0191
39DAP/reference0.964610.101
41DAP/reference0.858040.331
42DAP/reference0.78840.134
43DAP/reference0.808180.11
47DAP/reference0.955660.409
52DAP/reference0.987730.838
57DAP/reference0.697180.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.912390.566
26DAP/20DAP0.999231
34DAP/26DAP0.972290.879
51DAP/34DAP0.981620.844
52DAP/51DAP1.008620.915
53DAP/52DAP1.040490.868
55DAP/53DAP0.931160.5
57DAP/55DAP1.045561
62DAP/57DAP1.031380.935
68DAP/62DAP0.954310.722
68DAP/14DAP1.100840.295

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.040960.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.941930.611
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.62594

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.053011
1-1-2/M820.967441
12-2/M821.06781
12-4/M820.896631
1-3/M820.839720.441
2-1-1/M821.025941
2-1/M821.10488
2-6/M820.967471
3-2/M820.996481
4-1-1/M820.922121
4-1/M820.607041
4-3-2/M821.012591
4-3/M821.006031
5-3/M821.01671
6-2/M820.957141
6-3/M820.991281
7-1/M820.793670.509
7-2/M821.146380.324
9-3-2/M820.917510.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.99431
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.865850.418
IL12-4/WTpooled0.961250.71
IL1-4/WTpooled1.24025
WT/WTpooled0.983631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.732810.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.008021
DC3000/delta hrp 6h1.027641
DC3000/delta hrp 12h0.965071
DC3000/delta hrp 24h1.050910.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.081520.208
DC3000 delta B/DC3000 delta AB0.99891

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.909510.328
Exp 36h0.749640.406
Exp 60h0.633720.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014771
Var 0h0.773471
Var 12h I row2-row10.985260.948
Var 12h NI row2-row11.083071
Var 36h I row2-row10.932121
Var 36h NI row2-row11.024571
Var 60h I row2-row11.4760.562
Var 60h NI row2-row10.975571
Time course 0hI-0hNI0.951680.572
Time course 12hI-12hNI0.98060.799
Time course 36hI-36hNI0.946620.28
Time course 60hI-60hNI0.510140.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.069150.612
transgenic ySAMdc/azygous control (breaker)1.520010.161
transgenic ySAMdc/azygous control (red)1.116520.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.97060.231

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.606080.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.253580.083
Manapal/WT (break)2.783320.123
Manapal/WT (red)3.529440.137