Expression of 1-1-4.1.16.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.347420.166
27DAP/17DAP1.393820.839
39DAP/27DAP1.172020.972
41DAP/39DAP1.068850.964
42DAP/41DAP0.981961
43DAP/42DAP1.031841
47DAP/43DAP0.962560.828
52DAP/47DAP0.817520.54
57DAP/52DAP1.133750.962

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.807510.064
17DAP/reference1.028030.696
27DAP/reference1.113830.175
39DAP/reference1.075220.203
41DAP/reference0.952860.201
42DAP/reference1.223940.001
43DAP/reference1.482290.008
47DAP/reference1.290570.001
52DAP/reference0.949730.31
57DAP/reference1.232070.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.610.05
27DAP/17DAP0.919560.748
39DAP/27DAP1.644610.057
41DAP/39DAP0.593320.013
42DAP/41DAP1.355320.012
43DAP/42DAP2.092840.017
47DAP/43DAP0.877140.357
52DAP/47DAP1.145540.669
57DAP/52DAP0.961510.665
57DAP/7DAP1.516181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053220.776
17DAP/reference1.157630.123
27DAP/reference1.301390.088
39DAP/reference1.19830.016
41DAP/reference1.037130.678
42DAP/reference1.218290.021
43DAP/reference1.338760.035
47DAP/reference1.400340.018
52DAP/reference1.181090.113
57DAP/reference1.115560.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.751460.02
17DAP/reference1.032380.658
27DAP/reference1.003690.711
39DAP/reference0.961640.381
41DAP/reference1.064370.781
42DAP/reference1.239450.043
43DAP/reference1.03790.801
47DAP/reference1.101360.081
52DAP/reference0.954440.38
57DAP/reference0.839420.107

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.89970.119
17DAP/reference1.012991
27DAP/reference0.966650.397
39DAP/reference0.940230.271
41DAP/reference1.393520.486
42DAP/reference1.376290.007
43DAP/reference1.200870.062
47DAP/reference1.407150.007
52DAP/reference1.076040.614
57DAP/reference0.974210.5

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.102531
26DAP/20DAP0.719361
34DAP/26DAP1.086821
51DAP/34DAP1.042840.993
52DAP/51DAP0.97071
53DAP/52DAP0.751540.703
55DAP/53DAP1.059740.904
57DAP/55DAP0.913740.709
62DAP/57DAP1.124520.902
68DAP/62DAP1.032310.914
68DAP/14DAP0.9931

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker5.049850.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.4740.086
Mature Green Tomato/Ripe Tomato2.054650.166
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.325690.224
Mature Eggplant/Ripe Tomato0.05620.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.72788
1-1-2/M821.21124
12-2/M82N/AN/A
12-4/M821.338521
1-3/M821.884570.479
2-1-1/M820.64076
2-1/M820.62475
2-6/M821.55440.425
3-2/M821.769440.84
4-1-1/M821.531241
4-1/M821.093431
4-3-2/M821.62483
4-3/M821.222941
5-3/M820.724850.419
6-2/M822.07548
6-3/M820.596060.619
7-1/M820.87184
7-2/M821.342050.318
9-3-2/M821.988460.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.42075
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.56929
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.057811

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032910.921
DC3000/delta hrp 6h1.062161
DC3000/delta hrp 12h1.095371
DC3000/delta hrp 24h2.162610.026

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.074351
DC3000 delta B/DC3000 delta AB0.70370.297

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.064571
Exp 36h0.959270.879
Exp 60h1.13721

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.060791
Var 0h0.510810.594
Var 12h I row2-row11.734270.348
Var 12h NI row2-row11.187061
Var 36h I row2-row11.11970.298
Var 36h NI row2-row11.090751
Var 60h I row2-row10.869660.582
Var 60h NI row2-row10.98831
Time course 0hI-0hNI1.052120.852
Time course 12hI-12hNI0.846170.033
Time course 36hI-36hNI1.104460.799
Time course 60hI-60hNI1.099510.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.985950.862
transgenic ySAMdc/azygous control (breaker)0.912391
transgenic ySAMdc/azygous control (red)0.806561

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030250.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.366140.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.783961
Manapal/WT (break)0.678420.333
Manapal/WT (red)0.940560.728