Expression of 1-1-4.1.17.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09846 | 0.912 |
27DAP/17DAP | 1.51363 | 0.742 |
39DAP/27DAP | 1.36677 | 0.447 |
41DAP/39DAP | 1.4277 | 0.468 |
42DAP/41DAP | 1.2603 | 0.696 |
43DAP/42DAP | 1.06483 | 1 |
47DAP/43DAP | 1.49166 | 0.513 |
52DAP/47DAP | 0.92019 | 0.736 |
57DAP/52DAP | 1.24183 | 0.878 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11294 | 1 |
17DAP/reference | 0.99218 | 0.777 |
27DAP/reference | 1.14792 | 0.587 |
39DAP/reference | 1.01081 | 1 |
41DAP/reference | 1.0999 | 0.516 |
42DAP/reference | 1.19819 | 0.113 |
43DAP/reference | 1.15303 | 0.425 |
47DAP/reference | 1.19115 | 0.011 |
52DAP/reference | 1.02534 | 0.636 |
57DAP/reference | 1.1786 | 0.141 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94789 | 0.509 |
27DAP/17DAP | 0.9676 | 0.887 |
39DAP/27DAP | 1.36865 | 0.227 |
41DAP/39DAP | 0.7992 | 0.236 |
42DAP/41DAP | 1.21242 | 0.622 |
43DAP/42DAP | 1.17533 | 0.297 |
47DAP/43DAP | 1.10468 | 0.52 |
52DAP/47DAP | 1.67889 | 0.08 |
57DAP/52DAP | 1.48514 | 0.455 |
57DAP/7DAP | 1.18853 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73789 | 0.058 |
17DAP/reference | 0.78775 | 0.108 |
27DAP/reference | 0.85382 | 0.062 |
39DAP/reference | 0.70656 | 0.023 |
41DAP/reference | 0.74283 | 0.076 |
42DAP/reference | 0.64543 | 0.013 |
43DAP/reference | 0.76501 | 0.013 |
47DAP/reference | 1.22317 | 0.205 |
52DAP/reference | 0.77558 | 0.012 |
57DAP/reference | 0.68883 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95309 | 0.655 |
17DAP/reference | 0.85991 | 0.378 |
27DAP/reference | 1.23152 | 0.249 |
39DAP/reference | 1.21777 | 0.543 |
41DAP/reference | 1.13548 | 0.234 |
42DAP/reference | 2.04709 | 0.105 |
43DAP/reference | 0.97554 | 0.539 |
47DAP/reference | 1.08589 | 0.467 |
52DAP/reference | 0.99648 | 0.666 |
57DAP/reference | 0.90063 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88979 | 0.092 |
17DAP/reference | 1.00183 | 0.792 |
27DAP/reference | 0.9393 | 0.539 |
39DAP/reference | 0.8639 | 0.043 |
41DAP/reference | 1.04204 | 1 |
42DAP/reference | 1.20899 | 0.49 |
43DAP/reference | 0.95332 | 0.639 |
47DAP/reference | 1.03087 | 0.667 |
52DAP/reference | 1.07339 | 0.965 |
57DAP/reference | 1.23716 | 0.291 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.6837 | 1 |
26DAP/20DAP | 0.78498 | 0.228 |
34DAP/26DAP | 1.22641 | 1 |
51DAP/34DAP | 1.70237 | 0.092 |
52DAP/51DAP | 1.29039 | 0.377 |
53DAP/52DAP | 1.24141 | 0.552 |
55DAP/53DAP | 1.13464 | 0.755 |
57DAP/55DAP | 0.73874 | 0.132 |
62DAP/57DAP | 0.99208 | 0.994 |
68DAP/62DAP | 1.18499 | 0.864 |
68DAP/14DAP | 1.4291 | 0.739 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.6963 | 0.018 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.61221 | |
Mature Green Tomato/Ripe Tomato | 0.30659 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.05055 | 1 |
Mature Eggplant/Ripe Tomato | 0.04127 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.16123 | 1 |
1-3/M82 | 0.93266 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.83844 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.842 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.14151 | 1 |
6-2/M82 | 1.15156 | |
6-3/M82 | 0.8249 | |
7-1/M82 | 0.97378 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.71341 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.16158 | 0.456 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.94571 | 1 |
IL12-4/WTpooled | 1.40522 | 0.624 |
IL1-4/WTpooled | 1.23419 | |
WT/WTpooled | 1.05633 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96944 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11287 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.84388 | 1 |
DC3000/delta hrp 24h | 1.84579 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.55401 | |
DC3000 delta B/DC3000 delta AB | 1.20379 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04526 | 1 |
Var 0h | 1.07148 | 1 |
Var 12h I row2-row1 | 0.98922 | 1 |
Var 12h NI row2-row1 | 1.12414 | 1 |
Var 36h I row2-row1 | 0.98717 | 1 |
Var 36h NI row2-row1 | 0.78932 | 0.61 |
Var 60h I row2-row1 | 0.89099 | 0.952 |
Var 60h NI row2-row1 | 1.03396 | 1 |
Time course 0hI-0hNI | 1.04764 | 0.486 |
Time course 12hI-12hNI | 1.16636 | 0.044 |
Time course 36hI-36hNI | 1.03815 | 1 |
Time course 60hI-60hNI | 1.42921 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.05607 | 1 |
transgenic ySAMdc/azygous control (red) | 1.08498 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.94014 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.92577 | 1 |
Manapal/WT (red) | N/A | N/A |
|
|