Expression of 1-1-4.1.17.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.098460.912
27DAP/17DAP1.513630.742
39DAP/27DAP1.366770.447
41DAP/39DAP1.42770.468
42DAP/41DAP1.26030.696
43DAP/42DAP1.064831
47DAP/43DAP1.491660.513
52DAP/47DAP0.920190.736
57DAP/52DAP1.241830.878

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.112941
17DAP/reference0.992180.777
27DAP/reference1.147920.587
39DAP/reference1.010811
41DAP/reference1.09990.516
42DAP/reference1.198190.113
43DAP/reference1.153030.425
47DAP/reference1.191150.011
52DAP/reference1.025340.636
57DAP/reference1.17860.141

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.947890.509
27DAP/17DAP0.96760.887
39DAP/27DAP1.368650.227
41DAP/39DAP0.79920.236
42DAP/41DAP1.212420.622
43DAP/42DAP1.175330.297
47DAP/43DAP1.104680.52
52DAP/47DAP1.678890.08
57DAP/52DAP1.485140.455
57DAP/7DAP1.188530.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.737890.058
17DAP/reference0.787750.108
27DAP/reference0.853820.062
39DAP/reference0.706560.023
41DAP/reference0.742830.076
42DAP/reference0.645430.013
43DAP/reference0.765010.013
47DAP/reference1.223170.205
52DAP/reference0.775580.012
57DAP/reference0.688830.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.953090.655
17DAP/reference0.859910.378
27DAP/reference1.231520.249
39DAP/reference1.217770.543
41DAP/reference1.135480.234
42DAP/reference2.047090.105
43DAP/reference0.975540.539
47DAP/reference1.085890.467
52DAP/reference0.996480.666
57DAP/reference0.900630.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.889790.092
17DAP/reference1.001830.792
27DAP/reference0.93930.539
39DAP/reference0.86390.043
41DAP/reference1.042041
42DAP/reference1.208990.49
43DAP/reference0.953320.639
47DAP/reference1.030870.667
52DAP/reference1.073390.965
57DAP/reference1.237160.291

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.68371
26DAP/20DAP0.784980.228
34DAP/26DAP1.226411
51DAP/34DAP1.702370.092
52DAP/51DAP1.290390.377
53DAP/52DAP1.241410.552
55DAP/53DAP1.134640.755
57DAP/55DAP0.738740.132
62DAP/57DAP0.992080.994
68DAP/62DAP1.184990.864
68DAP/14DAP1.42910.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.69630.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.61221
Mature Green Tomato/Ripe Tomato0.306590.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.050551
Mature Eggplant/Ripe Tomato0.04127

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.161231
1-3/M820.93266
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.838441
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.8421
4-3/M82N/AN/A
5-3/M821.141511
6-2/M821.15156
6-3/M820.8249
7-1/M820.97378
7-2/M82N/AN/A
9-3-2/M820.71341

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.161580.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.945711
IL12-4/WTpooled1.405220.624
IL1-4/WTpooled1.23419
WT/WTpooled1.056331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.969441

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.112870.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.843881
DC3000/delta hrp 24h1.845790.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.55401
DC3000 delta B/DC3000 delta AB1.20379

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.045261
Var 0h1.071481
Var 12h I row2-row10.989221
Var 12h NI row2-row11.124141
Var 36h I row2-row10.987171
Var 36h NI row2-row10.789320.61
Var 60h I row2-row10.890990.952
Var 60h NI row2-row11.033961
Time course 0hI-0hNI1.047640.486
Time course 12hI-12hNI1.166360.044
Time course 36hI-36hNI1.038151
Time course 60hI-60hNI1.429210.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.056071
transgenic ySAMdc/azygous control (red)1.084981

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.940140.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.925771
Manapal/WT (red)N/AN/A