Tomato Functional Genomics Database (TFGD)

Expression of 1-1-4.1.18.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.92342	0.617
27DAP/17DAP	1.3762	0.761
39DAP/27DAP	1.05539	0.782
41DAP/39DAP	1.11743	0.708
42DAP/41DAP	0.98239	1
43DAP/42DAP	1.15498	0.985
47DAP/43DAP	1.36278	0.502
52DAP/47DAP	1.21706	0.918
57DAP/52DAP	0.72055	0.591

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96189	0.352
17DAP/reference	1.01842	1
27DAP/reference	0.96403	0.514
39DAP/reference	0.95175	0.587
41DAP/reference	1.00314	1
42DAP/reference	0.94103	0.05
43DAP/reference	0.89613	0.113
47DAP/reference	0.94976	0.258
52DAP/reference	0.97762	0.504
57DAP/reference	0.90683	0.131

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.77017	0.153
27DAP/17DAP	0.85041	0.537
39DAP/27DAP	1.19618	0.728
41DAP/39DAP	1.24404	0.656
42DAP/41DAP	1.03565	0.991
43DAP/42DAP	1.21575	0.192
47DAP/43DAP	1.08702	0.822
52DAP/47DAP	1.12032	0.696
57DAP/52DAP	1.10425	0.659
57DAP/7DAP	1.28206	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.13844	0.344
17DAP/reference	1.26495	0.221
27DAP/reference	1.1152	0.049
39DAP/reference	1.27224	0.073
41DAP/reference	1.23794	0.303
42DAP/reference	1.33117	0.024
43DAP/reference	1.43698	0.019
47DAP/reference	1.17599	0.214
52DAP/reference	1.22765	0.055
57DAP/reference	1.53798	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.08031	0.66
17DAP/reference	0.99013	0.711
27DAP/reference	1.09354	0.249
39DAP/reference	0.94816	0.281
41DAP/reference	1.03202	0.735
42DAP/reference	1.05394	0.843
43DAP/reference	0.81959	0.121
47DAP/reference	0.91244	0.116
52DAP/reference	1.04974	0.789
57DAP/reference	1.03094	0.786

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.1137	0.377
17DAP/reference	1.00394	0.855
27DAP/reference	1.1992	0.26
39DAP/reference	1.22119	0.017
41DAP/reference	1.1742	0.343
42DAP/reference	1.07138	0.576
43DAP/reference	1.10118	0.547
47DAP/reference	0.95525	0.335
52DAP/reference	1.01704	0.979
57DAP/reference	1.17177	0.362

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.3468	0.966
26DAP/20DAP	0.80449	0.512
34DAP/26DAP	0.927	0.898
51DAP/34DAP	0.94006	0.785
52DAP/51DAP	1.22368	0.492
53DAP/52DAP	0.99654	0.844
55DAP/53DAP	1.0369	0.893
57DAP/55DAP	0.76566	0.271
62DAP/57DAP	0.94889	0.871
68DAP/62DAP	1.50967	0.984
68DAP/14DAP	0.97171	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.16082	0.347

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.07433	0.018
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	0.8557
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	0.59904

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.18767	0.365
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	1.09738	0.426
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.49608	0.117

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	1.55571	1
DC3000/delta hrp 12h	1.00501	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.27588	1
Exp 36h	1.55583	0.693
Exp 60h	1.91916	0.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.05231	1
Var 0h	0.54662	0.421
Var 12h I row2-row1	1.06833	0.692
Var 12h NI row2-row1	1.3689	0.649
Var 36h I row2-row1	1.204	0.368
Var 36h NI row2-row1	0.77793	0.645
Var 60h I row2-row1	0.85194	0.285
Var 60h NI row2-row1	0.7282	0.458
Time course 0hI-0hNI	1.18298	0.764
Time course 12hI-12hNI	2.35463	0.007
Time course 36hI-36hNI	3.04102	0.005
Time course 60hI-60hNI	9.0751	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.94251	0.529
transgenic ySAMdc/azygous control (breaker)	0.48244	0.119
transgenic ySAMdc/azygous control (red)	0.82893	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.03646	0.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.46136	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.96045	1
Manapal/WT (break)	1.06861	1
Manapal/WT (red)	0.94116	0.728