Tomato Functional Genomics Database (TFGD)

Expression of 1-1-4.1.18.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.14927	0.561
27DAP/17DAP	1.2857	0.809
39DAP/27DAP	0.83519	0.537
41DAP/39DAP	1.11843	0.663
42DAP/41DAP	0.98873	1
43DAP/42DAP	0.99484	0.937
47DAP/43DAP	1.05342	0.856
52DAP/47DAP	1.11459	0.813
57DAP/52DAP	0.95542	0.94

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.0153	0.872
17DAP/reference	1.10825	0.1
27DAP/reference	1.01724	0.925
39DAP/reference	0.95519	0.342
41DAP/reference	1.09204	0.145
42DAP/reference	0.97531	0.169
43DAP/reference	1.05158	0.425
47DAP/reference	0.94929	0.174
52DAP/reference	0.77453	0.027
57DAP/reference	0.82076	0.019

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.96016	0.578
27DAP/17DAP	1.00658	0.988
39DAP/27DAP	1.01935	0.77
41DAP/39DAP	1.04843	0.801
42DAP/41DAP	0.97847	0.768
43DAP/42DAP	0.9973	1
47DAP/43DAP	0.9412	0.297
52DAP/47DAP	0.97508	0.884
57DAP/52DAP	1.00388	1
57DAP/7DAP	1.27364	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.88539	0.104
17DAP/reference	0.91242	0.02
27DAP/reference	0.83615	0.014
39DAP/reference	0.93154	0.073
41DAP/reference	0.92742	0.07
42DAP/reference	0.9104	0.024
43DAP/reference	0.91377	0.1
47DAP/reference	0.94794	0.222
52DAP/reference	0.86658	0.016
57DAP/reference	0.88693	0.008

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00707	0.952
17DAP/reference	1.00448	1
27DAP/reference	0.92136	0.24
39DAP/reference	0.95472	0.33
41DAP/reference	0.83974	0.046
42DAP/reference	0.83929	0.039
43DAP/reference	1.01217	0.875
47DAP/reference	0.91852	0.09
52DAP/reference	1.03415	0.629
57DAP/reference	1.13928	0.108

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96933	0.422
17DAP/reference	0.97682	0.647
27DAP/reference	0.89613	0.032
39DAP/reference	0.87604	0.04
41DAP/reference	0.84258	0.07
42DAP/reference	0.8042	0.049
43DAP/reference	0.81908	0.092
47DAP/reference	0.94736	0.371
52DAP/reference	0.87529	0.18
57DAP/reference	0.65814	0.02

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.00801	1
26DAP/20DAP	1.08526	0.718
34DAP/26DAP	0.97002	0.893
51DAP/34DAP	0.87276	0.333
52DAP/51DAP	1.04296	0.676
53DAP/52DAP	1.01904	0.944
55DAP/53DAP	0.99503	0.908
57DAP/55DAP	1.67593	0.643
62DAP/57DAP	1.08641	0.678
68DAP/62DAP	0.97165	0.81
68DAP/14DAP	0.88181	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.01771	0.774

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.50524
Mature Green Tomato/Ripe Tomato	1.18503	0.69
Immature Eggplant/Mature Eggplant	1.27003	0.239
Ripe Pepper/Ripe Tomato	0.4511	0.224
Mature Eggplant/Ripe Tomato	0.97056	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.74039	0.708
1-1-2/M82	0.89555	0.958
12-2/M82	1.04315	1
12-4/M82	0.97113	1
1-3/M82	0.77396	0.441
2-1-1/M82	1.29201
2-1/M82	1.30475	1
2-6/M82	1.12745	1
3-2/M82	0.9932
4-1-1/M82	1.12445	1
4-1/M82	1.20315	0.466
4-3-2/M82	0.84148	0.698
4-3/M82	0.67148	0.404
5-3/M82	1.03653	1
6-2/M82	1.05311	1
6-3/M82	1.13248	1
7-1/M82	0.84758
7-2/M82	0.94049	0.881
9-3-2/M82	0.8776	0.355

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.36541	0.277
IL2-6/WTpooled	0.81903	0.473
IL7-5/WTpooled	1.02156	1
IL7-3/WTpooled	1.4748	0.362
IL12-4/WTpooled	0.95324	1
IL1-4/WTpooled	1.25387	1
WT/WTpooled	0.8847	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.12519	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.9819	1
DC3000/delta hrp 6h	0.95293	0.95
DC3000/delta hrp 12h	1.31031	1
DC3000/delta hrp 24h	1.15758	0.059

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.86179	0.538
DC3000 delta B/DC3000 delta AB	1.04375	0.601

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.96003	1
Exp 36h	1.15685	0.693
Exp 60h	1.07973	0.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.04051	1
Var 0h	0.97868	1
Var 12h I row2-row1	1.13928	0.379
Var 12h NI row2-row1	0.96338	0.82
Var 36h I row2-row1	0.90035	0.575
Var 36h NI row2-row1	0.7605	1
Var 60h I row2-row1	1.3588	0.562
Var 60h NI row2-row1	1.3072	0.904
Time course 0hI-0hNI	1.10899	0.344
Time course 12hI-12hNI	1.05443	0.65
Time course 36hI-36hNI	0.91177	0.127
Time course 60hI-60hNI	1.182	0.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.99093	0.862
transgenic ySAMdc/azygous control (breaker)	0.55761	0.122
transgenic ySAMdc/azygous control (red)	0.87002	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.01891	0.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.66934	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.89235	1
Manapal/WT (break)	1.13372	1
Manapal/WT (red)	1.24261	0.413